Variant report

Variant	rs59989137
Chromosome Location	chr6:36733623-36733624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36733583..36737358-chr6:36839243..36844837,5	MCF-7	breast:
2	chr6:36731587..36733687-chr6:36952350..36954273,2	MCF-7	breast:
3	chr6:36733549..36734625-chr6:36985573..36986688,19	K562	blood:
4	chr6:36731859..36733721-chr6:36744461..36746494,2	MCF-7	breast:
5	chr6:36724584..36727925-chr6:36730250..36733668,5	MCF-7	breast:
6	chr6:36726753..36730019-chr6:36730894..36734737,3	K562	blood:
7	chr6:36733614..36734738-chr6:36818383..36819576,11	MCF-7	breast:
8	chr6:36732942..36735975-chr6:36816237..36818800,3	MCF-7	breast:
9	chr6:36732357..36734281-chr6:36851932..36853693,2	MCF-7	breast:
10	chr6:36723524..36726204-chr6:36732546..36734917,2	K562	blood:
11	chr6:36733415..36734583-chr6:36985207..36986995,7	MCF-7	breast:
12	chr6:36732636..36735426-chr6:36737432..36739720,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000198663	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16889095	1.00[AMR][1000 genomes]
rs61248529	0.82[AFR][1000 genomes]
rs6924574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414269	1.00[AMR][1000 genomes]
rs73414274	0.83[AMR][1000 genomes]
rs7769909	1.00[AMR][1000 genomes]
rs7769997	1.00[AMR][1000 genomes]
rs7770263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36723800-36736200	Weak transcription	Right Atrium	heart
3	chr6:36724000-36736200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:36724800-36734400	Weak transcription	Right Ventricle	heart
5	chr6:36725600-36733800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:36725800-36735400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:36726000-36736200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:36726800-36733800	Weak transcription	Pancreas	Pancrea
9	chr6:36727000-36733800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:36727200-36734000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:36727200-36736400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:36727400-36735200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:36727400-36736200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:36732000-36733800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:36732400-36734200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:36732400-36734600	Enhancers	Fetal Brain Male	brain
17	chr6:36732400-36738600	Enhancers	Fetal Muscle Leg	muscle
18	chr6:36732600-36734200	Enhancers	Ovary	ovary
19	chr6:36732600-36734600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:36732800-36734400	Enhancers	Fetal Brain Female	brain
21	chr6:36732800-36734600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:36732800-36738800	Enhancers	Primary B cells from cord blood	blood
23	chr6:36732800-36739000	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:36732800-36739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:36732800-36739800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:36733000-36733800	Enhancers	Colonic Mucosa	Colon
27	chr6:36733000-36734000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:36733000-36734000	Enhancers	Spleen	Spleen
29	chr6:36733000-36734200	Enhancers	Brain Substantia Nigra	brain
30	chr6:36733000-36734400	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:36733000-36734400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:36733000-36734400	Enhancers	Placenta	Placenta
33	chr6:36733000-36734400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:36733000-36734400	Enhancers	Stomach Smooth Muscle	stomach
35	chr6:36733000-36734600	Enhancers	Brain Hippocampus Middle	brain
36	chr6:36733000-36734600	Enhancers	Fetal Thymus	thymus
37	chr6:36733200-36733800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:36733200-36733800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:36733200-36733800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:36733200-36734000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:36733200-36734000	Enhancers	Fetal Stomach	stomach
42	chr6:36733200-36734000	Enhancers	NHDF-Ad	bronchial
43	chr6:36733200-36734400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:36733200-36734400	Enhancers	Duodenum Mucosa	Duodenum
45	chr6:36733200-36734400	Enhancers	Fetal Heart	heart
46	chr6:36733200-36734400	Enhancers	Fetal Intestine Small	intestine
47	chr6:36733200-36734400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:36733200-36734400	Enhancers	NHLF	lung
49	chr6:36733200-36734600	Enhancers	Brain Angular Gyrus	brain
50	chr6:36733200-36734600	Enhancers	Duodenum Smooth Muscle	Duodenum

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