Variant report

Variant	rs73414274
Chromosome Location	chr6:36739723-36739724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36739374..36742354-chr6:36743945..36746524,2	K562	blood:
2	chr6:36738403..36740304-chr6:36929030..36931302,2	K562	blood:
3	chr6:36737147..36740325-chr6:36742690..36745905,3	MCF-7	breast:
4	chr6:36735765..36740410-chr6:36741274..36745029,7	K562	blood:
5	chr6:36738035..36740977-chr6:36841095..36842978,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164530	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16889095	0.83[AMR][1000 genomes]
rs59989137	0.83[AMR][1000 genomes]
rs6924574	0.83[AMR][1000 genomes]
rs73414269	0.83[AMR][1000 genomes]
rs73414275	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73414279	0.83[AMR][1000 genomes]
rs7769909	0.83[AMR][1000 genomes]
rs7769997	0.83[AMR][1000 genomes]
rs7770263	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36732800-36739800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:36733600-36740000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:36734000-36739800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:36734400-36740000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:36734400-36744800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:36735800-36740400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:36736400-36740800	Enhancers	Fetal Thymus	thymus
9	chr6:36737000-36740000	Enhancers	Spleen	Spleen
10	chr6:36737400-36739800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:36737400-36741200	Weak transcription	Fetal Brain Male	brain
12	chr6:36737600-36739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:36737600-36742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:36737800-36740000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:36737800-36740200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:36737800-36741400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:36737800-36742200	Weak transcription	Fetal Brain Female	brain
18	chr6:36737800-36744400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:36737800-36744800	Weak transcription	Brain Germinal Matrix	brain
20	chr6:36738000-36739800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:36738000-36739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:36738000-36739800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:36738000-36739800	Weak transcription	Brain Anterior Caudate	brain
24	chr6:36738000-36739800	Weak transcription	Thymus	Thymus
25	chr6:36738000-36740000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:36738000-36740000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:36738000-36740000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:36738000-36740200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:36738000-36745000	Weak transcription	Brain Angular Gyrus	brain
30	chr6:36738000-36745200	Weak transcription	Fetal Lung	lung
31	chr6:36738000-36746000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:36738200-36739800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
34	chr6:36738400-36740600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
36	chr6:36738600-36739800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:36738600-36741000	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:36738600-36742000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:36738600-36742800	Weak transcription	Left Ventricle	heart
40	chr6:36738600-36743200	Strong transcription	Fetal Stomach	stomach
41	chr6:36738600-36746000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:36738600-36746800	Weak transcription	Right Ventricle	heart
43	chr6:36739000-36740000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:36739000-36740400	Flanking Active TSS	Dnd41	blood
45	chr6:36739000-36740600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:36739200-36742200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:36739400-36740600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:36739600-36740400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:36739600-36740400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:36739600-36740400	Enhancers	Brain Cingulate Gyrus	brain

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