Variant report

Variant	rs60004331
Chromosome Location	chr1:153357719-153357720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57609812	1.00[AMR][1000 genomes]
rs61731275	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153353400-153366400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:153355800-153359800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:153355800-153360000	Enhancers	NHEK	skin
4	chr1:153356400-153360000	Enhancers	Esophagus	oesophagus
5	chr1:153356400-153361600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:153356600-153360000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:153356800-153360000	Enhancers	HMEC	breast
8	chr1:153356800-153360400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:153356800-153360600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr1:153356800-153368200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr1:153357000-153358800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:153357400-153358000	Enhancers	Brain Hippocampus Middle	brain
13	chr1:153357400-153358000	Enhancers	Placenta	Placenta
14	chr1:153357400-153358400	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:153357400-153358600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:153357400-153360000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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