Variant report

Variant	rs61731275
Chromosome Location	chr1:153362624-153362625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000143556	Chromatin interaction
ENSG00000224784	Chromatin interaction
ENSG00000184330	Chromatin interaction
ENSG00000163220	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57609812	1.00[AMR][1000 genomes]
rs60004331	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153353400-153366400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:153356800-153368200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr1:153358000-153362800	Weak transcription	Placenta	Placenta
4	chr1:153361200-153363800	Active TSS	Primary B cells from cord blood	blood
5	chr1:153361400-153363000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr1:153361600-153366400	Active TSS	Primary hematopoietic stem cells	blood
7	chr1:153361800-153368600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:153362000-153362800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:153362000-153364400	Enhancers	NHEK	skin
10	chr1:153362000-153364600	Enhancers	HMEC	breast
11	chr1:153362200-153364200	Active TSS	Esophagus	oesophagus
12	chr1:153362400-153363000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:153362400-153364000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:153362400-153364000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:153362400-153364200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:153362600-153363200	Active TSS	Primary monocytes fromperipheralblood	blood
17	chr1:153362600-153363200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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