Variant report

Variant	rs60008010
Chromosome Location	chr1:57933721-57933722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59240973	1.00[AMR][1000 genomes]
rs61572023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909265	1.00[AMR][1000 genomes]
rs72909280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909281	1.00[AMR][1000 genomes]
rs72910541	1.00[AMR][1000 genomes]
rs72911217	0.86[AFR][1000 genomes]
rs72911220	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72913145	1.00[AMR][1000 genomes]
rs72913146	1.00[AMR][1000 genomes]
rs72913149	1.00[AMR][1000 genomes]
rs72913162	1.00[AMR][1000 genomes]
rs72913192	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57917400-57933800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57930800-57934800	Weak transcription	NHLF	lung
3	chr1:57931000-57934400	Weak transcription	Hela-S3	cervix
4	chr1:57931000-57935200	Weak transcription	Fetal Brain Female	brain
5	chr1:57932800-57942400	Weak transcription	Stomach Mucosa	stomach
6	chr1:57933000-57937000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:57933200-57934800	Enhancers	Fetal Brain Male	brain
8	chr1:57933200-57935800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:57933200-57937000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:57933600-57934000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:57933600-57934000	Enhancers	Psoas Muscle	Psoas
12	chr1:57933600-57934200	Enhancers	Right Atrium	heart
13	chr1:57933600-57937000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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