Variant report

Variant	rs72909265
Chromosome Location	chr1:57916226-57916227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs59240973	1.00[AMR][1000 genomes]
rs60008010	1.00[AMR][1000 genomes]
rs61572023	1.00[AMR][1000 genomes]
rs72909280	1.00[AMR][1000 genomes]
rs72909281	1.00[AMR][1000 genomes]
rs72910541	1.00[AMR][1000 genomes]
rs72911220	1.00[AMR][1000 genomes]
rs72913145	1.00[AMR][1000 genomes]
rs72913146	1.00[AMR][1000 genomes]
rs72913149	1.00[AMR][1000 genomes]
rs72913162	1.00[AMR][1000 genomes]
rs72913192	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57907000-57916400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:57915600-57917800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:57915800-57917400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:57916000-57917400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:57916000-57917800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr1:57916200-57917000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:57916200-57917800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:57916200-57917800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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