Variant report

Variant	rs60012003
Chromosome Location	chr6:91762732-91762733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10806441	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12175362	0.89[ASN][1000 genomes]
rs60820208	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62417799	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754694	0.84[ASN][1000 genomes]
rs7754975	0.87[ASN][1000 genomes]
rs9342256	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9345078	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9345079	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9345085	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9362810	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9451567	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523939	chr6:91067623-91790493	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv463946	chr6:91710872-91769607	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91762400-91763000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:91762400-91763000	Active TSS	Placenta	Placenta
3	chr6:91762400-91763200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:91762400-91763200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr6:91762400-91763200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:91762600-91763000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:91762600-91763000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:91762600-91763200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr6:91762600-91763400	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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