Variant report

Variant	rs60031851
Chromosome Location	chr1:224859126-224859127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224850263..224854124-chr1:224858225..224860779,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56331910	1.00[AMR][1000 genomes]
rs56803202	1.00[AMR][1000 genomes]
rs56879180	1.00[AMR][1000 genomes]
rs57257659	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59093574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60017318	1.00[AMR][1000 genomes]
rs61674651	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6680134	1.00[AMR][1000 genomes]
rs74146215	1.00[AMR][1000 genomes]
rs74146216	1.00[AMR][1000 genomes]
rs74146218	1.00[AMR][1000 genomes]
rs74146220	1.00[AMR][1000 genomes]
rs74146224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224832800-224869000	Weak transcription	Dnd41	blood
3	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:224851400-224863000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:224857000-224862600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:224857200-224860800	Weak transcription	Left Ventricle	heart
7	chr1:224857200-224860800	Weak transcription	Ovary	ovary
8	chr1:224857200-224869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:224857200-224869200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:224857400-224860200	Weak transcription	Fetal Brain Male	brain
11	chr1:224857400-224860600	Weak transcription	Fetal Heart	heart
12	chr1:224857400-224860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:224857400-224860800	Weak transcription	Fetal Stomach	stomach
14	chr1:224857400-224860800	Weak transcription	Pancreas	Pancrea
15	chr1:224857400-224861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:224858400-224871800	Weak transcription	NHLF	lung
17	chr1:224858400-224874200	Weak transcription	NH-A	brain
18	chr1:224858600-224859200	Weak transcription	NHDF-Ad	bronchial
19	chr1:224858600-224860600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:224858600-224861800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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