Variant report

Variant	rs60036541
Chromosome Location	chr4:130275209-130275210
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17014617	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55871533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56015549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57089329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58918263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851107	1.00[AMR][1000 genomes]
rs73851109	1.00[AMR][1000 genomes]
rs73851113	1.00[AMR][1000 genomes]
rs73851117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851119	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130272400-130275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:130275200-130275400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links