Variant report

Variant	rs73851109
Chromosome Location	chr4:130263096-130263097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17014617	1.00[AMR][1000 genomes]
rs17014625	1.00[AMR][1000 genomes]
rs55871533	1.00[AMR][1000 genomes]
rs56015549	1.00[AMR][1000 genomes]
rs57089329	1.00[AMR][1000 genomes]
rs58918263	1.00[AMR][1000 genomes]
rs60036541	1.00[AMR][1000 genomes]
rs73848203	1.00[AMR][1000 genomes]
rs73848204	1.00[AMR][1000 genomes]
rs73848205	1.00[AMR][1000 genomes]
rs73851107	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851113	1.00[AMR][1000 genomes]
rs73851117	1.00[AMR][1000 genomes]
rs73851118	1.00[AMR][1000 genomes]
rs73851119	1.00[AMR][1000 genomes]
rs73851120	1.00[AMR][1000 genomes]
rs73851121	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130258400-130267600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:130258800-130265400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:130262800-130263400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:130262800-130263600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:130262800-130263800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:130263000-130263200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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