Variant report

Variant	rs60049410
Chromosome Location	chr9:95746157-95746158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95744507..95747360-chr9:95750258..95753715,3	MCF-7	breast:
2	chr9:95735773..95738938-chr9:95746079..95753670,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56028701	0.92[AFR][1000 genomes]
rs56063226	0.92[AFR][1000 genomes]
rs58971964	1.00[AFR][1000 genomes]
rs73651345	1.00[AFR][1000 genomes]
rs73651346	1.00[AFR][1000 genomes]
rs73651349	0.92[AFR][1000 genomes]
rs73651350	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95735400-95752600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
2	chr9:95740000-95754800	Weak transcription	Gastric	stomach
3	chr9:95740000-95754800	Weak transcription	Pancreas	Pancrea
4	chr9:95740200-95746200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:95740200-95746200	Weak transcription	Thymus	Thymus
6	chr9:95740200-95750000	Weak transcription	Esophagus	oesophagus
7	chr9:95740200-95750600	Weak transcription	Lung	lung
8	chr9:95741600-95746200	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:95743000-95746200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr9:95743000-95747600	ZNF genes & repeats	Dnd41	blood
11	chr9:95743200-95746200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:95743800-95748200	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:95744400-95747600	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr9:95744400-95747600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:95744400-95747600	ZNF genes & repeats	GM12878-XiMat	blood
16	chr9:95744400-95751400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr9:95744600-95746400	Strong transcription	Primary T cells from cord blood	blood
18	chr9:95744600-95747400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:95744600-95749200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr9:95745000-95746200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr9:95745000-95746400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:95745200-95746200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:95745200-95746200	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr9:95745200-95746200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:95745200-95746800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:95745400-95747000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr9:95745800-95746600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr9:95745800-95746600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:95745800-95747200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:95745800-95749800	Strong transcription	Fetal Thymus	thymus
31	chr9:95745800-95753200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr9:95746000-95747000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
33	chr9:95746000-95748200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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