Variant report

Variant	rs73651345
Chromosome Location	chr9:95728476-95728477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95726879..95729699-chr9:95735044..95738591,3	K562	blood:
2	chr9:95726594..95728723-chr9:95769310..95772276,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56028701	0.92[AFR][1000 genomes]
rs56063226	0.92[AFR][1000 genomes]
rs58971964	1.00[AFR][1000 genomes]
rs60049410	1.00[AFR][1000 genomes]
rs73651346	1.00[AFR][1000 genomes]
rs73651349	0.92[AFR][1000 genomes]
rs73651350	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:95725400-95728600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr9:95725600-95729200	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr9:95725800-95728800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:95725800-95729000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:95725800-95729200	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr9:95726000-95728600	Active TSS	Rectal Smooth Muscle	rectum
10	chr9:95726000-95728800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:95726000-95728800	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr9:95726200-95728600	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr9:95726200-95728800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:95726400-95729000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:95726400-95729000	Active TSS	Esophagus	oesophagus
16	chr9:95726400-95730200	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr9:95726600-95728600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:95726600-95728600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr9:95726600-95728600	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr9:95726600-95728800	Active TSS	Gastric	stomach
21	chr9:95726600-95728800	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr9:95726600-95728800	Active TSS	Small Intestine	intestine
23	chr9:95726600-95729000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:95726600-95729000	Active TSS	Liver	Liver
25	chr9:95726600-95729000	Active TSS	Placenta	Placenta
26	chr9:95726600-95730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:95726600-95731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:95726800-95728800	Flanking Active TSS	GM12878-XiMat	blood
29	chr9:95726800-95731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:95726800-95731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:95726800-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:95727000-95728600	Genic enhancers	Brain Germinal Matrix	brain
33	chr9:95727000-95729800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
34	chr9:95727000-95729800	Transcr. at gene 5' and 3'	Dnd41	blood
35	chr9:95727200-95728800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr9:95727200-95729200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr9:95727400-95728800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:95727400-95729000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:95727400-95729000	Enhancers	Right Ventricle	heart
40	chr9:95727400-95729600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr9:95727600-95728600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:95727600-95728800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
43	chr9:95727600-95728800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
44	chr9:95727800-95728800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:95727800-95728800	Enhancers	Brain Hippocampus Middle	brain
46	chr9:95727800-95729000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr9:95728000-95728600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr9:95728000-95728800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr9:95728000-95729000	Transcr. at gene 5' and 3'	Thymus	Thymus
50	chr9:95728000-95729400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--

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