Variant report

Variant	rs6005733
Chromosome Location	chr22:28564931-28564932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12157518	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12160232	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16986103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16986290	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16986377	0.90[ASN][1000 genomes]
rs17486417	0.82[AFR][1000 genomes]
rs2345714	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28462248	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs55961693	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs5997341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997355	0.90[ASN][1000 genomes]
rs5997363	0.86[ASN][1000 genomes]
rs5997365	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5997367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6005697	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6005704	0.81[AFR][1000 genomes]
rs6005724	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005735	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005751	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005757	0.90[ASN][1000 genomes]
rs6005758	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005765	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6005779	0.88[ASN][1000 genomes]
rs6005783	0.85[AFR][1000 genomes]
rs73427747	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7510988	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28540200-28567800	Weak transcription	Gastric	stomach
2	chr22:28540800-28567800	Weak transcription	Small Intestine	intestine
3	chr22:28543400-28568800	Weak transcription	NHDF-Ad	bronchial
4	chr22:28543800-28567200	Weak transcription	Fetal Heart	heart
5	chr22:28548400-28566600	Weak transcription	Colon Smooth Muscle	Colon
6	chr22:28556800-28567000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:28557600-28567800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr22:28559600-28566800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr22:28559600-28566800	Weak transcription	Fetal Lung	lung
10	chr22:28559600-28566800	Weak transcription	Left Ventricle	heart
11	chr22:28559600-28567000	Weak transcription	Fetal Brain Male	brain
12	chr22:28559600-28567200	Weak transcription	Adipose Nuclei	Adipose
13	chr22:28559600-28567600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr22:28559600-28567800	Weak transcription	Ovary	ovary
15	chr22:28559800-28566800	Weak transcription	Dnd41	blood
16	chr22:28559800-28577400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:28560200-28567200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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