Variant report

Variant	rs73427747
Chromosome Location	chr22:28582273-28582274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12157518	0.95[ASN][1000 genomes]
rs12160232	0.88[ASN][1000 genomes]
rs16986103	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16986290	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16986377	0.90[ASN][1000 genomes]
rs2345714	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28462248	0.93[ASN][1000 genomes]
rs55961693	0.93[ASN][1000 genomes]
rs5997341	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5997355	0.90[ASN][1000 genomes]
rs5997363	0.86[ASN][1000 genomes]
rs5997365	0.90[ASN][1000 genomes]
rs5997367	0.90[ASN][1000 genomes]
rs6005697	0.88[ASN][1000 genomes]
rs6005724	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6005726	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005733	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005735	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005751	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005757	0.90[ASN][1000 genomes]
rs6005758	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005765	0.95[ASN][1000 genomes]
rs6005779	0.88[ASN][1000 genomes]
rs73428082	0.90[ASN][1000 genomes]
rs7510988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28572200-28597800	Weak transcription	Dnd41	blood
2	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
3	chr22:28577400-28584600	Weak transcription	Fetal Brain Female	brain
4	chr22:28577800-28600400	Weak transcription	Right Atrium	heart
5	chr22:28578000-28583200	Weak transcription	Fetal Brain Male	brain
6	chr22:28578400-28583600	Weak transcription	Fetal Muscle Leg	muscle
7	chr22:28578400-28583800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr22:28579600-28584600	Weak transcription	Psoas Muscle	Psoas
9	chr22:28579600-28587400	Weak transcription	Lung	lung
10	chr22:28580200-28582800	Weak transcription	Fetal Heart	heart
11	chr22:28580200-28583600	Weak transcription	Fetal Lung	lung
12	chr22:28580400-28583800	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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