Variant report

Variant	rs6005845
Chromosome Location	chr22:29109705-29109706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12159808	1.00[AMR][1000 genomes]
rs12160448	1.00[AMR][1000 genomes]
rs12160862	1.00[AMR][1000 genomes]
rs12161029	1.00[AMR][1000 genomes]
rs17886176	1.00[AFR][1000 genomes]
rs5997402	1.00[AMR][1000 genomes]
rs6005787	1.00[AMR][1000 genomes]
rs6005791	1.00[AMR][1000 genomes]
rs6005836	1.00[AMR][1000 genomes]
rs7292515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv9895	chr22:29029961-29184277	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1064624	chr22:29065528-29130728	Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv513775	chr22:29083731-29137822	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv517951	chr22:29105558-29135889	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29076200-29137600	Weak transcription	Esophagus	oesophagus
2	chr22:29076400-29119200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:29076400-29129400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr22:29079600-29130200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:29082200-29109800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr22:29082800-29137600	Weak transcription	Spleen	Spleen
7	chr22:29083000-29126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr22:29085000-29116600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr22:29088600-29118600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr22:29090200-29129000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr22:29090400-29110800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr22:29090600-29137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:29090600-29137200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr22:29091000-29116600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr22:29091000-29120200	Weak transcription	Placenta	Placenta
16	chr22:29093600-29121800	Weak transcription	Small Intestine	intestine
17	chr22:29093600-29132000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:29093800-29126600	Weak transcription	Gastric	stomach
19	chr22:29094600-29125000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr22:29095200-29114600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr22:29097000-29130800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr22:29098800-29111400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr22:29099400-29109800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr22:29099800-29129000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr22:29100400-29137200	Weak transcription	Pancreas	Pancrea
26	chr22:29101200-29118800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr22:29101600-29131000	Strong transcription	Dnd41	blood
28	chr22:29102400-29119600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr22:29103400-29118800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr22:29103600-29114600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr22:29103600-29118800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr22:29103600-29124800	Weak transcription	GM12878-XiMat	blood
33	chr22:29103600-29132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr22:29103800-29114800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr22:29104200-29116600	Weak transcription	Thymus	Thymus
36	chr22:29104400-29116600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr22:29104800-29116600	Weak transcription	Fetal Intestine Large	intestine
38	chr22:29105600-29110400	Strong transcription	Primary T cells from cord blood	blood
39	chr22:29105600-29137200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr22:29106000-29129200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr22:29106400-29110800	Weak transcription	Fetal Intestine Small	intestine
42	chr22:29106400-29114800	Weak transcription	Fetal Thymus	thymus
43	chr22:29106600-29112600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr22:29107200-29110600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr22:29107200-29112600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr22:29107400-29109800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr22:29107400-29112600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr22:29107600-29114200	Weak transcription	Primary B cells from cord blood	blood
49	chr22:29107600-29116600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr22:29107600-29118600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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