Variant report

Variant	rs60059095
Chromosome Location	chr6:75793685-75793686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12660953	0.95[AMR][1000 genomes]
rs2273264	0.82[AMR][1000 genomes]
rs541705	0.99[ASN][1000 genomes]
rs57290966	0.95[AMR][1000 genomes]
rs9447435	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022377	chr6:75762463-75919592	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv538309	chr6:75762463-75919592	Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv830697	chr6:75763095-75915029	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1016804	chr6:75775846-76188585	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538310	chr6:75775846-76188585	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv463155	chr6:75789526-75980419	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv603762	chr6:75789526-75980419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75782600-75794600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:75785400-75794600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:75786000-75794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:75787600-75794400	Weak transcription	Aorta	Aorta
5	chr6:75787800-75794200	Weak transcription	Adipose Nuclei	Adipose
6	chr6:75787800-75794600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:75788000-75794400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:75789200-75794000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:75789200-75800400	Strong transcription	Osteobl	bone
10	chr6:75789400-75800400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:75789600-75794000	Weak transcription	HSMMtube	muscle
12	chr6:75789800-75801000	Strong transcription	HSMM	muscle
13	chr6:75790000-75801200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:75792000-75794400	Weak transcription	Ovary	ovary
15	chr6:75792000-75794600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:75792200-75794400	Weak transcription	Fetal Stomach	stomach
17	chr6:75792400-75793800	Weak transcription	NHDF-Ad	bronchial
18	chr6:75792400-75797800	Weak transcription	Hela-S3	cervix
19	chr6:75792800-75794600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:75792800-75794800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:75793000-75794600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:75793000-75804800	Strong transcription	HMEC	breast
23	chr6:75793200-75794400	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:75793200-75794600	Strong transcription	NHEK	skin
25	chr6:75793200-75794800	Weak transcription	Left Ventricle	heart
26	chr6:75793200-75795400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:75793200-75800800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:75793200-75802400	Strong transcription	NHLF	lung
29	chr6:75793200-75803400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:75793600-75794400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:75793600-75794400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:75793600-75795000	Strong transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links