Variant report

Variant	rs9447435
Chromosome Location	chr6:75769615-75769616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12660953	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13437111	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16886197	1.00[CEU][hapmap]
rs171262	1.00[EUR][1000 genomes]
rs2300791	1.00[CEU][hapmap]
rs2300794	1.00[CEU][hapmap]
rs240372	1.00[EUR][1000 genomes]
rs240373	1.00[EUR][1000 genomes]
rs2883118	1.00[CEU][hapmap]
rs41266763	1.00[EUR][1000 genomes]
rs41269301	1.00[EUR][1000 genomes]
rs4388259	1.00[CEU][hapmap]
rs4449593	1.00[EUR][1000 genomes]
rs510507	1.00[EUR][1000 genomes]
rs545588	1.00[CEU][hapmap]
rs560250	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57290966	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs581649	1.00[EUR][1000 genomes]
rs60059095	0.83[AMR][1000 genomes]
rs60256732	1.00[EUR][1000 genomes]
rs61177673	1.00[EUR][1000 genomes]
rs6453812	0.82[ASN][1000 genomes]
rs658592	1.00[CEU][hapmap]
rs6927227	1.00[CEU][hapmap]
rs6931519	1.00[EUR][1000 genomes]
rs6932000	1.00[CEU][hapmap]
rs73462090	1.00[EUR][1000 genomes]
rs73747440	1.00[EUR][1000 genomes]
rs73747841	1.00[EUR][1000 genomes]
rs73747843	1.00[EUR][1000 genomes]
rs765796	0.82[ASN][1000 genomes]
rs7738809	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7743883	1.00[CEU][hapmap]
rs7749000	1.00[CEU][hapmap]
rs7754400	1.00[CEU][hapmap]
rs7755906	1.00[CEU][hapmap]
rs7771969	0.82[ASN][1000 genomes]
rs7772503	1.00[CEU][hapmap]
rs7775765	1.00[CEU][hapmap]
rs7776027	1.00[CEU][hapmap]
rs9293988	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9343266	0.82[ASN][1000 genomes]
rs9443122	1.00[EUR][1000 genomes]
rs9443125	1.00[EUR][1000 genomes]
rs9447369	1.00[EUR][1000 genomes]
rs9447370	1.00[CEU][hapmap]
rs9447372	1.00[EUR][1000 genomes]
rs9447373	1.00[EUR][1000 genomes]
rs9447383	1.00[EUR][1000 genomes]
rs9447384	1.00[EUR][1000 genomes]
rs9447387	1.00[EUR][1000 genomes]
rs9447392	1.00[EUR][1000 genomes]
rs9447393	1.00[EUR][1000 genomes]
rs9447440	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022377	chr6:75762463-75919592	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv538309	chr6:75762463-75919592	Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv830697	chr6:75763095-75915029	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75769600-75769800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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