Variant report
| Variant | rs7743883 |
|---|---|
| Chromosome Location | chr6:75625251-75625252 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:75623758..75626363-chr6:75914057..75916388,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111799 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10223595 | 1.00[MEX][hapmap] |
| rs13437111 | 1.00[CEU][hapmap] |
| rs2883118 | 1.00[CEU][hapmap] |
| rs4388259 | 1.00[CEU][hapmap] |
| rs5023496 | 1.00[CEU][hapmap] |
| rs560250 | 1.00[CEU][hapmap] |
| rs581649 | 1.00[CEU][hapmap] |
| rs59364413 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6453795 | 0.80[AFR][1000 genomes] |
| rs6920790 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs6932000 | 1.00[CEU][hapmap] |
| rs6935326 | 0.80[AFR][1000 genomes] |
| rs6940086 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7738809 | 1.00[CEU][hapmap] |
| rs7747261 | 0.98[AFR][1000 genomes] |
| rs7749000 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs7749133 | 0.86[AFR][1000 genomes] |
| rs7754400 | 1.00[CEU][hapmap] |
| rs7755906 | 1.00[CEU][hapmap];0.92[MKK][hapmap] |
| rs7772503 | 1.00[CEU][hapmap] |
| rs7775765 | 1.00[CEU][hapmap] |
| rs7776027 | 1.00[CEU][hapmap] |
| rs9293988 | 1.00[CEU][hapmap] |
| rs9443100 | 0.83[AFR][1000 genomes] |
| rs9443110 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447317 | 1.00[CEU][hapmap] |
| rs9447337 | 0.83[AFR][1000 genomes] |
| rs9447343 | 0.83[AFR][1000 genomes] |
| rs9447370 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2757179 | chr6:75525739-75625251 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2759443 | chr6:75525739-75625251 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv830696 | chr6:75538316-75734609 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv970688 | chr6:75624687-75628040 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
