Variant report

Variant	rs10223595
Chromosome Location	chr6:75694149-75694150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75692587..75694827-chr6:75914555..75917474,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10046165	1.00[EUR][1000 genomes]
rs10046211	1.00[EUR][1000 genomes]
rs10943232	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10943233	1.00[EUR][1000 genomes]
rs11964481	1.00[EUR][1000 genomes]
rs35710072	1.00[EUR][1000 genomes]
rs36002196	1.00[EUR][1000 genomes]
rs4235892	1.00[EUR][1000 genomes]
rs4266465	1.00[EUR][1000 genomes]
rs4292495	1.00[EUR][1000 genomes]
rs4473827	1.00[EUR][1000 genomes]
rs56118316	1.00[EUR][1000 genomes]
rs56978570	1.00[EUR][1000 genomes]
rs57413481	1.00[EUR][1000 genomes]
rs58333285	1.00[EUR][1000 genomes]
rs59360261	1.00[EUR][1000 genomes]
rs61396810	1.00[EUR][1000 genomes]
rs61413320	1.00[EUR][1000 genomes]
rs61544138	1.00[EUR][1000 genomes]
rs6453794	1.00[EUR][1000 genomes]
rs6453814	1.00[EUR][1000 genomes]
rs6903588	1.00[EUR][1000 genomes]
rs6906046	1.00[EUR][1000 genomes]
rs6907120	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6909123	1.00[EUR][1000 genomes]
rs6911004	1.00[EUR][1000 genomes]
rs6920790	1.00[EUR][1000 genomes]
rs6921378	1.00[EUR][1000 genomes]
rs6931257	1.00[EUR][1000 genomes]
rs73456147	1.00[EUR][1000 genomes]
rs7743883	1.00[MEX][hapmap]
rs7747708	1.00[EUR][1000 genomes]
rs7754758	1.00[EUR][1000 genomes]
rs7766168	1.00[EUR][1000 genomes]
rs7772904	1.00[EUR][1000 genomes]
rs9293993	1.00[EUR][1000 genomes]
rs9293994	1.00[EUR][1000 genomes]
rs9293995	1.00[EUR][1000 genomes]
rs9293996	1.00[EUR][1000 genomes]
rs9352183	1.00[EUR][1000 genomes]
rs9443109	1.00[EUR][1000 genomes]
rs9443130	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443133	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9443135	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9443151	1.00[EUR][1000 genomes]
rs9443152	1.00[EUR][1000 genomes]
rs9447341	1.00[EUR][1000 genomes]
rs9447342	1.00[EUR][1000 genomes]
rs9447409	1.00[EUR][1000 genomes]
rs9447441	1.00[EUR][1000 genomes]
rs9447443	1.00[EUR][1000 genomes]
rs9447444	1.00[EUR][1000 genomes]
rs9447446	1.00[EUR][1000 genomes]
rs9447448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75687200-75695400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75687200-75695600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:75689200-75695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:75689400-75695600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:75694000-75694800	Enhancers	Fetal Lung	lung

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