Variant report

Variant	rs6931257
Chromosome Location	chr6:75717730-75717731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10046165	1.00[EUR][1000 genomes]
rs10046211	1.00[EUR][1000 genomes]
rs10223595	1.00[EUR][1000 genomes]
rs10943232	1.00[EUR][1000 genomes]
rs10943233	1.00[EUR][1000 genomes]
rs11964481	1.00[EUR][1000 genomes]
rs35710072	1.00[EUR][1000 genomes]
rs36002196	1.00[EUR][1000 genomes]
rs4235892	1.00[EUR][1000 genomes]
rs4266465	1.00[EUR][1000 genomes]
rs4292495	1.00[EUR][1000 genomes]
rs4473827	1.00[EUR][1000 genomes]
rs56118316	1.00[EUR][1000 genomes]
rs56978570	1.00[EUR][1000 genomes]
rs57132004	0.86[ASN][1000 genomes]
rs57413481	1.00[EUR][1000 genomes]
rs58333285	1.00[EUR][1000 genomes]
rs59360261	1.00[EUR][1000 genomes]
rs61396810	1.00[EUR][1000 genomes]
rs61413320	1.00[EUR][1000 genomes]
rs61544138	1.00[EUR][1000 genomes]
rs6453794	1.00[EUR][1000 genomes]
rs6453814	1.00[EUR][1000 genomes]
rs6903588	1.00[EUR][1000 genomes]
rs6906046	1.00[EUR][1000 genomes]
rs6907120	1.00[EUR][1000 genomes]
rs6909123	1.00[EUR][1000 genomes]
rs6911004	1.00[EUR][1000 genomes]
rs6918451	0.80[ASN][1000 genomes]
rs6920790	1.00[EUR][1000 genomes]
rs6921378	1.00[EUR][1000 genomes]
rs6934506	0.82[ASN][1000 genomes]
rs73456147	1.00[EUR][1000 genomes]
rs7747708	1.00[EUR][1000 genomes]
rs7754758	1.00[EUR][1000 genomes]
rs7766168	1.00[EUR][1000 genomes]
rs7772904	1.00[EUR][1000 genomes]
rs9293991	0.88[AMR][1000 genomes]
rs9293993	1.00[EUR][1000 genomes]
rs9293994	1.00[EUR][1000 genomes]
rs9293995	1.00[EUR][1000 genomes]
rs9293996	1.00[EUR][1000 genomes]
rs9341507	0.82[ASN][1000 genomes]
rs9352183	1.00[EUR][1000 genomes]
rs9443109	1.00[EUR][1000 genomes]
rs9443130	1.00[EUR][1000 genomes]
rs9443133	1.00[EUR][1000 genomes]
rs9443135	1.00[EUR][1000 genomes]
rs9443136	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9443137	0.94[AMR][1000 genomes]
rs9443151	1.00[EUR][1000 genomes]
rs9443152	1.00[EUR][1000 genomes]
rs9447341	1.00[EUR][1000 genomes]
rs9447342	1.00[EUR][1000 genomes]
rs9447400	0.85[AMR][1000 genomes]
rs9447409	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447410	0.94[AMR][1000 genomes]
rs9447413	0.88[AMR][1000 genomes]
rs9447420	0.82[ASN][1000 genomes]
rs9447441	1.00[EUR][1000 genomes]
rs9447443	1.00[EUR][1000 genomes]
rs9447444	1.00[EUR][1000 genomes]
rs9447446	1.00[EUR][1000 genomes]
rs9447448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv970047	chr6:75713017-75721589	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv436512	chr6:75715638-75726015	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75707800-75721600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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