Variant report
| Variant | rs9293991 |
|---|---|
| Chromosome Location | chr6:75707806-75707807 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs13437111 | 1.00[CEU][hapmap] |
| rs16886197 | 1.00[CEU][hapmap] |
| rs2300791 | 1.00[CEU][hapmap] |
| rs2300794 | 1.00[CEU][hapmap] |
| rs2353250 | 1.00[EUR][1000 genomes] |
| rs2883118 | 1.00[CEU][hapmap] |
| rs4388259 | 1.00[CEU][hapmap] |
| rs4406194 | 1.00[EUR][1000 genomes] |
| rs545588 | 1.00[CEU][hapmap] |
| rs560250 | 1.00[CEU][hapmap] |
| rs6453807 | 0.83[AMR][1000 genomes] |
| rs658592 | 1.00[CEU][hapmap] |
| rs6903588 | 0.87[AMR][1000 genomes] |
| rs6918451 | 0.89[ASN][1000 genomes] |
| rs6921378 | 0.87[AMR][1000 genomes] |
| rs6931257 | 0.88[AMR][1000 genomes] |
| rs6932000 | 1.00[CEU][hapmap] |
| rs6934506 | 0.91[ASN][1000 genomes] |
| rs7738809 | 1.00[CEU][hapmap] |
| rs7743883 | 1.00[CEU][hapmap] |
| rs7749000 | 1.00[CEU][hapmap] |
| rs7754400 | 1.00[CEU][hapmap] |
| rs7754758 | 0.81[AMR][1000 genomes] |
| rs7755906 | 1.00[CEU][hapmap] |
| rs7760457 | 1.00[EUR][1000 genomes] |
| rs7772503 | 1.00[CEU][hapmap] |
| rs7772904 | 0.81[AMR][1000 genomes] |
| rs7775765 | 1.00[CEU][hapmap] |
| rs7776027 | 1.00[CEU][hapmap] |
| rs9293988 | 1.00[CEU][hapmap] |
| rs9341507 | 0.91[ASN][1000 genomes] |
| rs9443119 | 1.00[EUR][1000 genomes] |
| rs9443136 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9443137 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447317 | 1.00[CEU][hapmap] |
| rs9447370 | 1.00[CEU][hapmap] |
| rs9447399 | 1.00[AFR][1000 genomes] |
| rs9447400 | 1.00[ASN][1000 genomes] |
| rs9447409 | 1.00[AMR][1000 genomes] |
| rs9447410 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9447412 | 1.00[EUR][1000 genomes] |
| rs9447413 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447420 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830696 | chr6:75538316-75734609 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75703000-75716200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:75707800-75721600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
