Variant report

Variant	rs9447420
Chromosome Location	chr6:75734973-75734974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10223595	0.84[YRI][hapmap]
rs11964481	0.90[AMR][1000 genomes]
rs16885835	1.00[GIH][hapmap]
rs2883118	1.00[GIH][hapmap]
rs4388259	1.00[GIH][hapmap]
rs4473827	0.90[AMR][1000 genomes]
rs6907120	0.90[AMR][1000 genomes]
rs6918451	0.88[ASN][1000 genomes]
rs6931257	0.82[ASN][1000 genomes]
rs6932000	0.87[GIH][hapmap]
rs6934506	0.90[ASN][1000 genomes]
rs7755906	0.87[GIH][hapmap]
rs7760457	0.90[AMR][1000 genomes]
rs7775765	0.87[GIH][hapmap]
rs9293991	0.82[ASN][1000 genomes]
rs9341507	0.90[ASN][1000 genomes]
rs9443133	0.90[AMR][1000 genomes]
rs9443135	0.90[AMR][1000 genomes]
rs9443136	0.90[ASN][1000 genomes]
rs9447400	0.82[ASN][1000 genomes]
rs9447410	0.86[ASN][1000 genomes]
rs9447412	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970729	chr6:75731546-75735559	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75733000-75735600	Enhancers	HUVEC	blood vessel
2	chr6:75733400-75735200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:75733800-75735000	Weak transcription	NHDF-Ad	bronchial
4	chr6:75734200-75735200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:75734400-75736200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:75734600-75735000	Enhancers	Colon Smooth Muscle	Colon
7	chr6:75734600-75735200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr6:75734600-75735200	Enhancers	Fetal Lung	lung
9	chr6:75734800-75735000	Enhancers	Osteobl	bone
10	chr6:75734800-75735600	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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