Variant report

Variant	rs6932000
Chromosome Location	chr6:75680571-75680572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:75312619..75316343-chr6:75677557..75681482,3	MCF-7	breast:
2	chr6:75678710..75681421-chr6:75685866..75687554,2	MCF-7	breast:
3	chr6:75665143..75670328-chr6:75679224..75682641,4	MCF-7	breast:
4	chr6:75678289..75682945-chr6:75910306..75916824,17	MCF-7	breast:
5	chr6:75679003..75680747-chr6:75687605..75691074,3	MCF-7	breast:
6	chr6:75677800..75681711-chr6:75913586..75916557,3	MCF-7	breast:
7	chr6:75663889..75666468-chr6:75678897..75680837,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10080721	1.00[ASN][1000 genomes]
rs12661592	0.98[ASN][1000 genomes]
rs12663829	0.87[ASN][1000 genomes]
rs12663977	1.00[ASN][1000 genomes]
rs12664010	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12664513	0.98[ASN][1000 genomes]
rs12664807	0.96[ASN][1000 genomes]
rs12664984	0.96[ASN][1000 genomes]
rs12665297	0.90[CHB][hapmap];0.94[ASN][1000 genomes]
rs12665702	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs12665801	0.96[ASN][1000 genomes]
rs13437111	1.00[CEU][hapmap]
rs16885835	0.90[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.87[ASN][1000 genomes]
rs16885844	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs16885865	0.95[ASN][1000 genomes]
rs16885904	0.96[ASN][1000 genomes]
rs16885908	0.96[ASN][1000 genomes]
rs16885914	0.98[ASN][1000 genomes]
rs16885916	0.98[ASN][1000 genomes]
rs16885971	1.00[ASN][1000 genomes]
rs16886197	1.00[CEU][hapmap]
rs2300791	1.00[CEU][hapmap]
rs2300794	1.00[CEU][hapmap]
rs2353249	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2353251	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2883118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28832995	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35129971	0.96[ASN][1000 genomes]
rs35835665	0.96[ASN][1000 genomes]
rs35871031	0.96[ASN][1000 genomes]
rs4085727	0.96[ASN][1000 genomes]
rs4085729	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4085730	0.95[ASN][1000 genomes]
rs4085731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4112825	0.95[ASN][1000 genomes]
rs4112826	0.95[ASN][1000 genomes]
rs4286732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4388259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4495246	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4612126	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs545588	1.00[CEU][hapmap]
rs560250	1.00[CEU][hapmap]
rs57183891	0.96[ASN][1000 genomes]
rs57290574	0.96[ASN][1000 genomes]
rs57560334	0.96[ASN][1000 genomes]
rs57904603	0.89[ASN][1000 genomes]
rs581649	1.00[CEU][hapmap]
rs58699375	0.96[ASN][1000 genomes]
rs59041629	0.96[ASN][1000 genomes]
rs59051124	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59154474	0.96[ASN][1000 genomes]
rs59617477	1.00[ASN][1000 genomes]
rs59695593	1.00[ASN][1000 genomes]
rs59848727	0.96[ASN][1000 genomes]
rs60108944	0.96[ASN][1000 genomes]
rs60321049	1.00[ASN][1000 genomes]
rs60356008	0.96[ASN][1000 genomes]
rs60555684	1.00[ASN][1000 genomes]
rs60909334	1.00[ASN][1000 genomes]
rs61308045	1.00[ASN][1000 genomes]
rs61380374	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61612838	0.96[ASN][1000 genomes]
rs6453790	0.83[ASN][1000 genomes]
rs6453795	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6453797	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453798	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658592	1.00[CEU][hapmap]
rs6910855	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916626	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917149	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922193	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923380	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929192	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6932942	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935326	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73458044	0.83[ASN][1000 genomes]
rs73458047	0.83[ASN][1000 genomes]
rs7451287	1.00[ASN][1000 genomes]
rs7738809	1.00[CEU][hapmap]
rs7739660	1.00[ASN][1000 genomes]
rs7743883	1.00[CEU][hapmap]
rs7746348	0.81[ASN][1000 genomes]
rs7747261	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7749000	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7749133	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7753238	0.98[ASN][1000 genomes]
rs7754400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7755906	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs7769481	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7769487	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7772503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772564	1.00[ASN][1000 genomes]
rs7775765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7776027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293988	1.00[CEU][hapmap]
rs9443092	0.84[ASN][1000 genomes]
rs9443095	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9443096	0.83[ASN][1000 genomes]
rs9443100	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9443124	1.00[ASN][1000 genomes]
rs9443126	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443129	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447317	1.00[CEU][hapmap]
rs9447335	0.80[ASN][1000 genomes]
rs9447337	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9447339	0.83[ASN][1000 genomes]
rs9447343	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9447370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9447371	0.96[ASN][1000 genomes]
rs9447374	0.96[ASN][1000 genomes]
rs9447376	0.96[ASN][1000 genomes]
rs9447377	0.96[ASN][1000 genomes]
rs9447378	0.98[ASN][1000 genomes]
rs9447379	0.98[ASN][1000 genomes]
rs9447380	0.98[ASN][1000 genomes]
rs9447386	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447388	1.00[ASN][1000 genomes]
rs9447391	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447394	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447399	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447400	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75679800-75681200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:75679800-75682600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:75679800-75685800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:75679800-75686400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:75680000-75681400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:75680200-75681400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:75680200-75682200	Weak transcription	NHEK	skin
8	chr6:75680400-75682600	Weak transcription	HUVEC	blood vessel

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