Variant report

Variant	rs59051124
Chromosome Location	chr6:75576325-75576326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10080721	0.84[ASN][1000 genomes]
rs12661592	0.86[ASN][1000 genomes]
rs12662661	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12663829	0.94[ASN][1000 genomes]
rs12663977	0.84[ASN][1000 genomes]
rs12664010	0.84[ASN][1000 genomes]
rs12664096	0.83[ASN][1000 genomes]
rs12664513	0.86[ASN][1000 genomes]
rs12664807	0.86[ASN][1000 genomes]
rs12664984	0.86[ASN][1000 genomes]
rs12665297	0.88[ASN][1000 genomes]
rs12665702	0.94[ASN][1000 genomes]
rs12665801	0.86[ASN][1000 genomes]
rs16885835	0.94[ASN][1000 genomes]
rs16885844	0.94[ASN][1000 genomes]
rs16885865	0.87[ASN][1000 genomes]
rs16885904	0.86[ASN][1000 genomes]
rs16885908	0.86[ASN][1000 genomes]
rs16885914	0.86[ASN][1000 genomes]
rs16885916	0.86[ASN][1000 genomes]
rs16885971	0.84[ASN][1000 genomes]
rs2353249	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2353251	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2883118	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28832995	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35129971	0.86[ASN][1000 genomes]
rs35835665	0.86[ASN][1000 genomes]
rs35871031	0.86[ASN][1000 genomes]
rs4085727	0.86[ASN][1000 genomes]
rs4085729	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4085730	0.87[ASN][1000 genomes]
rs4085731	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4112825	0.87[ASN][1000 genomes]
rs4112826	0.87[ASN][1000 genomes]
rs4286732	0.83[AMR][1000 genomes]
rs4388259	0.97[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4495246	0.84[ASN][1000 genomes]
rs4612126	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57183891	0.86[ASN][1000 genomes]
rs57290574	0.86[ASN][1000 genomes]
rs57560334	0.86[ASN][1000 genomes]
rs58699375	0.86[ASN][1000 genomes]
rs59041629	0.86[ASN][1000 genomes]
rs59154474	0.86[ASN][1000 genomes]
rs59617477	0.84[ASN][1000 genomes]
rs59695593	0.84[ASN][1000 genomes]
rs59848727	0.86[ASN][1000 genomes]
rs60108944	0.86[ASN][1000 genomes]
rs60321049	0.84[ASN][1000 genomes]
rs60356008	0.86[ASN][1000 genomes]
rs60555684	0.84[ASN][1000 genomes]
rs60909334	0.84[ASN][1000 genomes]
rs61308045	0.84[ASN][1000 genomes]
rs61380374	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61612838	0.86[ASN][1000 genomes]
rs6453790	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6453795	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6453797	0.84[ASN][1000 genomes]
rs6453798	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6910855	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6916626	0.84[ASN][1000 genomes]
rs6917149	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6922193	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6923380	0.84[ASN][1000 genomes]
rs6929192	0.97[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6932000	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6932942	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6935326	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6940086	0.90[AFR][1000 genomes]
rs73458044	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73458047	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7451287	0.84[ASN][1000 genomes]
rs7739660	0.84[ASN][1000 genomes]
rs7746348	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7747261	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749000	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7749133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753238	0.83[ASN][1000 genomes]
rs7755906	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7769481	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7769487	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7772503	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7772564	0.84[ASN][1000 genomes]
rs7775765	0.84[ASN][1000 genomes]
rs7776027	0.84[ASN][1000 genomes]
rs9443092	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9443095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443096	0.99[ASN][1000 genomes]
rs9443100	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9443104	0.85[ASN][1000 genomes]
rs9443110	0.81[AFR][1000 genomes]
rs9443124	0.84[ASN][1000 genomes]
rs9443126	0.84[ASN][1000 genomes]
rs9443129	0.84[ASN][1000 genomes]
rs9447335	0.95[ASN][1000 genomes]
rs9447337	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447339	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9447343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447370	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9447371	0.86[ASN][1000 genomes]
rs9447374	0.86[ASN][1000 genomes]
rs9447376	0.86[ASN][1000 genomes]
rs9447377	0.86[ASN][1000 genomes]
rs9447378	0.86[ASN][1000 genomes]
rs9447379	0.86[ASN][1000 genomes]
rs9447380	0.86[ASN][1000 genomes]
rs9447386	0.84[ASN][1000 genomes]
rs9447388	0.84[ASN][1000 genomes]
rs9447391	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9447394	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9447399	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886170	chr6:75477971-75577359	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886171	chr6:75527856-75577359	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886174	chr6:75536940-75577359	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886176	chr6:75539434-75577359	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv603760	chr6:75542717-75583386	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75571000-75577000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75575400-75580400	Weak transcription	HSMMtube	muscle
3	chr6:75576200-75576600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links