Variant report

Variant	rs6932942
Chromosome Location	chr6:75647521-75647522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75647072..75648764-chr6:75664904..75666431,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10080721	0.96[ASN][1000 genomes]
rs12661592	0.98[ASN][1000 genomes]
rs12662661	0.80[ASN][1000 genomes]
rs12663829	0.92[ASN][1000 genomes]
rs12663977	0.96[ASN][1000 genomes]
rs12664010	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12664096	0.81[ASN][1000 genomes]
rs12664513	0.98[ASN][1000 genomes]
rs12664807	1.00[ASN][1000 genomes]
rs12664984	1.00[ASN][1000 genomes]
rs12665297	0.98[ASN][1000 genomes]
rs12665702	0.92[ASN][1000 genomes]
rs12665801	1.00[ASN][1000 genomes]
rs16885835	0.92[ASN][1000 genomes]
rs16885844	0.92[ASN][1000 genomes]
rs16885865	0.99[ASN][1000 genomes]
rs16885904	1.00[ASN][1000 genomes]
rs16885908	1.00[ASN][1000 genomes]
rs16885914	0.98[ASN][1000 genomes]
rs16885916	0.98[ASN][1000 genomes]
rs16885971	0.96[ASN][1000 genomes]
rs2353249	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2353251	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2883118	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28832995	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35129971	1.00[ASN][1000 genomes]
rs35835665	1.00[ASN][1000 genomes]
rs35871031	1.00[ASN][1000 genomes]
rs4085727	1.00[ASN][1000 genomes]
rs4085729	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4085730	0.99[ASN][1000 genomes]
rs4085731	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4112825	0.99[ASN][1000 genomes]
rs4112826	0.99[ASN][1000 genomes]
rs4286732	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4388259	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495246	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4612126	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57183891	1.00[ASN][1000 genomes]
rs57290574	1.00[ASN][1000 genomes]
rs57560334	1.00[ASN][1000 genomes]
rs57904603	0.93[ASN][1000 genomes]
rs58699375	1.00[ASN][1000 genomes]
rs59041629	1.00[ASN][1000 genomes]
rs59051124	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59154474	1.00[ASN][1000 genomes]
rs59617477	0.96[ASN][1000 genomes]
rs59695593	0.96[ASN][1000 genomes]
rs59848727	1.00[ASN][1000 genomes]
rs60108944	1.00[ASN][1000 genomes]
rs60321049	0.96[ASN][1000 genomes]
rs60356008	1.00[ASN][1000 genomes]
rs60555684	0.96[ASN][1000 genomes]
rs60909334	0.96[ASN][1000 genomes]
rs61308045	0.96[ASN][1000 genomes]
rs61380374	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61612838	1.00[ASN][1000 genomes]
rs6453790	0.87[ASN][1000 genomes]
rs6453795	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6453797	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453798	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910855	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6917149	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922193	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923380	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929192	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6932000	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935326	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73458044	0.87[ASN][1000 genomes]
rs73458047	0.87[ASN][1000 genomes]
rs7451287	0.96[ASN][1000 genomes]
rs7739660	0.96[ASN][1000 genomes]
rs7746348	0.83[ASN][1000 genomes]
rs7747261	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7749000	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7749133	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7753238	0.94[ASN][1000 genomes]
rs7755906	0.87[ASN][1000 genomes]
rs7769481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7769487	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772503	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772564	0.96[ASN][1000 genomes]
rs7775765	0.96[ASN][1000 genomes]
rs7776027	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443092	0.86[ASN][1000 genomes]
rs9443095	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9443096	0.87[ASN][1000 genomes]
rs9443100	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9443124	0.96[ASN][1000 genomes]
rs9443126	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443129	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9447335	0.84[ASN][1000 genomes]
rs9447337	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9447339	0.87[ASN][1000 genomes]
rs9447343	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9447370	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447371	1.00[ASN][1000 genomes]
rs9447374	1.00[ASN][1000 genomes]
rs9447376	1.00[ASN][1000 genomes]
rs9447377	1.00[ASN][1000 genomes]
rs9447378	0.98[ASN][1000 genomes]
rs9447379	0.98[ASN][1000 genomes]
rs9447380	0.98[ASN][1000 genomes]
rs9447386	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9447388	0.96[ASN][1000 genomes]
rs9447391	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9447394	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9447399	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75643000-75656800	Weak transcription	HSMMtube	muscle
2	chr6:75643800-75656800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75646000-75647600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:75646000-75648000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:75646000-75648000	Enhancers	Osteobl	bone
6	chr6:75646200-75647800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:75646400-75648000	Enhancers	HUVEC	blood vessel
8	chr6:75646400-75648000	Enhancers	NH-A	brain
9	chr6:75647000-75647800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:75647000-75649200	Weak transcription	NHEK	skin
11	chr6:75647000-75649600	Weak transcription	NHLF	lung
12	chr6:75647000-75657000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:75647200-75648200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:75647200-75649000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:75647200-75651800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:75647200-75652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:75647400-75647800	Weak transcription	HMEC	breast
18	chr6:75647400-75649000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:75647400-75650200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:75647400-75651600	Weak transcription	NHDF-Ad	bronchial
21	chr6:75647400-75651800	Weak transcription	HSMM	muscle

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