Variant report

Variant	rs2883118
Chromosome Location	chr6:75642984-75642985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75639046..75641423-chr6:75642242..75645228,2	MCF-7	breast:
2	chr6:75558269..75560458-chr6:75641599..75644531,2	K562	blood:

Variant related genes	Relation type
ENSG00000219736	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10080721	0.95[ASN][1000 genomes]
rs12661592	0.97[ASN][1000 genomes]
rs12663829	0.91[ASN][1000 genomes]
rs12663977	0.95[ASN][1000 genomes]
rs12664010	0.95[ASN][1000 genomes]
rs12664096	0.80[ASN][1000 genomes]
rs12664513	0.97[ASN][1000 genomes]
rs12664807	0.99[ASN][1000 genomes]
rs12664984	0.99[ASN][1000 genomes]
rs12665297	0.90[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs12665702	0.90[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs12665801	0.99[ASN][1000 genomes]
rs13437111	1.00[CEU][hapmap]
rs16885835	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs16885844	0.90[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs16885865	0.98[ASN][1000 genomes]
rs16885904	0.99[ASN][1000 genomes]
rs16885908	0.99[ASN][1000 genomes]
rs16885914	0.97[ASN][1000 genomes]
rs16885916	0.97[ASN][1000 genomes]
rs16885971	0.95[ASN][1000 genomes]
rs2353249	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2353250	0.89[AFR][1000 genomes]
rs2353251	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28832995	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35129971	0.99[ASN][1000 genomes]
rs35835665	0.99[ASN][1000 genomes]
rs35871031	0.99[ASN][1000 genomes]
rs4085727	0.99[ASN][1000 genomes]
rs4085729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4085730	0.98[ASN][1000 genomes]
rs4085731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4112825	0.98[ASN][1000 genomes]
rs4112826	0.98[ASN][1000 genomes]
rs4286732	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4388259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4495246	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4612126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs560250	1.00[CEU][hapmap]
rs57183891	0.99[ASN][1000 genomes]
rs57290574	0.99[ASN][1000 genomes]
rs57560334	0.99[ASN][1000 genomes]
rs57904603	0.92[ASN][1000 genomes]
rs581649	1.00[CEU][hapmap]
rs58699375	0.99[ASN][1000 genomes]
rs59041629	0.99[ASN][1000 genomes]
rs59051124	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59154474	0.99[ASN][1000 genomes]
rs59617477	0.95[ASN][1000 genomes]
rs59695593	0.95[ASN][1000 genomes]
rs59848727	0.99[ASN][1000 genomes]
rs60108944	0.99[ASN][1000 genomes]
rs60321049	0.95[ASN][1000 genomes]
rs60356008	0.99[ASN][1000 genomes]
rs60555684	0.95[ASN][1000 genomes]
rs60909334	0.95[ASN][1000 genomes]
rs61308045	0.95[ASN][1000 genomes]
rs61380374	0.95[ASN][1000 genomes]
rs61612838	0.99[ASN][1000 genomes]
rs6453790	0.86[ASN][1000 genomes]
rs6453795	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6453797	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6453798	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910855	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6916626	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917149	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6922193	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923380	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6929192	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6932000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932942	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935326	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73458044	0.86[ASN][1000 genomes]
rs73458047	0.86[ASN][1000 genomes]
rs7451287	0.95[ASN][1000 genomes]
rs7738809	1.00[CEU][hapmap]
rs7739660	0.95[ASN][1000 genomes]
rs7743883	1.00[CEU][hapmap]
rs7746348	0.82[ASN][1000 genomes]
rs7747261	0.88[ASN][1000 genomes]
rs7749000	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7749133	0.90[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7753238	0.93[ASN][1000 genomes]
rs7754400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7755906	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7769481	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769487	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772564	0.95[ASN][1000 genomes]
rs7775765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]
rs7776027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9293988	1.00[CEU][hapmap]
rs9443092	0.85[ASN][1000 genomes]
rs9443095	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9443096	0.86[ASN][1000 genomes]
rs9443100	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9443119	0.94[AFR][1000 genomes]
rs9443124	0.95[ASN][1000 genomes]
rs9443126	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9443129	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9447317	1.00[CEU][hapmap]
rs9447335	0.83[ASN][1000 genomes]
rs9447337	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9447339	0.86[ASN][1000 genomes]
rs9447343	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9447370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[MKK][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447371	0.99[ASN][1000 genomes]
rs9447374	0.99[ASN][1000 genomes]
rs9447376	0.99[ASN][1000 genomes]
rs9447377	0.99[ASN][1000 genomes]
rs9447378	0.97[ASN][1000 genomes]
rs9447379	0.97[ASN][1000 genomes]
rs9447380	0.97[ASN][1000 genomes]
rs9447386	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9447388	0.95[ASN][1000 genomes]
rs9447391	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9447394	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9447399	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75639800-75643000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:75639800-75643600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75640400-75643000	Enhancers	HMEC	breast
4	chr6:75640400-75643200	Enhancers	NHLF	lung
5	chr6:75640600-75643200	Enhancers	Osteobl	bone
6	chr6:75641600-75643000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:75641800-75643800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:75642000-75643000	Enhancers	HSMMtube	muscle
9	chr6:75642200-75643000	Enhancers	HepG2	liver
10	chr6:75642400-75643800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:75642600-75646000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:75642600-75646000	Weak transcription	NHDF-Ad	bronchial
13	chr6:75642600-75646200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:75642600-75646400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:75642600-75646400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:75642600-75646400	Weak transcription	NH-A	brain
17	chr6:75642600-75646600	Weak transcription	NHEK	skin
18	chr6:75642600-75647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:75642600-75647200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:75642800-75646000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:75642800-75646000	Weak transcription	HSMM	muscle
22	chr6:75642800-75646400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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