Variant report

Variant	rs2353250
Chromosome Location	chr6:75646760-75646761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13437111	1.00[CEU][hapmap]
rs2353251	0.95[AFR][1000 genomes]
rs2883118	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs4085729	0.84[AFR][1000 genomes]
rs4085731	0.89[AFR][1000 genomes]
rs4292495	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4388259	1.00[CEU][hapmap]
rs4406194	1.00[EUR][1000 genomes]
rs560250	1.00[CEU][hapmap]
rs6932000	1.00[CEU][hapmap]
rs7738809	1.00[CEU][hapmap]
rs7743883	1.00[CEU][hapmap]
rs7749000	1.00[CEU][hapmap]
rs7754400	1.00[CEU][hapmap]
rs7755906	1.00[CEU][hapmap]
rs7760457	1.00[EUR][1000 genomes]
rs7772503	1.00[CEU][hapmap]
rs7775765	1.00[CEU][hapmap]
rs7776027	1.00[CEU][hapmap]
rs9293988	1.00[CEU][hapmap]
rs9293991	1.00[EUR][1000 genomes]
rs9443119	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443136	1.00[EUR][1000 genomes]
rs9443137	1.00[EUR][1000 genomes]
rs9447317	1.00[CEU][hapmap]
rs9447341	0.94[AMR][1000 genomes]
rs9447370	1.00[CEU][hapmap]
rs9447412	1.00[EUR][1000 genomes]
rs9447413	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75642600-75647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:75642600-75647200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:75643000-75656800	Weak transcription	HSMMtube	muscle
4	chr6:75643800-75656800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:75646000-75647400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:75646000-75647400	Enhancers	HSMM	muscle
7	chr6:75646000-75647400	Enhancers	NHDF-Ad	bronchial
8	chr6:75646000-75647600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:75646000-75648000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:75646000-75648000	Enhancers	Osteobl	bone
11	chr6:75646200-75647800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:75646400-75646800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:75646400-75647000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:75646400-75647000	Enhancers	NHLF	lung
15	chr6:75646400-75647200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:75646400-75647200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:75646400-75647200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:75646400-75647400	Enhancers	HMEC	breast
19	chr6:75646400-75648000	Enhancers	HUVEC	blood vessel
20	chr6:75646400-75648000	Enhancers	NH-A	brain
21	chr6:75646600-75647000	Enhancers	NHEK	skin

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