Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75639046..75641423-chr6:75642242..75645228,2	MCF-7	breast:
2	chr6:75637854..75641239-chr6:75643350..75645986,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10223595	1.00[MEX][hapmap]
rs13437111	1.00[CEU][hapmap]
rs2353250	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2353251	0.90[AFR][1000 genomes]
rs2883118	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[LWK][hapmap];0.95[MKK][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs4085729	0.88[AFR][1000 genomes]
rs4085731	0.94[AFR][1000 genomes]
rs4388259	1.00[CEU][hapmap]
rs4406194	1.00[EUR][1000 genomes]
rs560250	1.00[CEU][hapmap]
rs581649	1.00[CEU][hapmap]
rs6920790	0.81[AMR][1000 genomes]
rs6932000	1.00[CEU][hapmap]
rs7738809	1.00[CEU][hapmap]
rs7743883	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs7749000	1.00[CEU][hapmap]
rs7754400	1.00[CEU][hapmap]
rs7755906	1.00[CEU][hapmap]
rs7760457	1.00[EUR][1000 genomes]
rs7772503	1.00[CEU][hapmap]
rs7775765	1.00[CEU][hapmap]
rs7776027	1.00[CEU][hapmap]
rs9293988	1.00[CEU][hapmap]
rs9293991	1.00[EUR][1000 genomes]
rs9443136	1.00[EUR][1000 genomes]
rs9443137	1.00[EUR][1000 genomes]
rs9447317	1.00[CEU][hapmap]
rs9447341	0.88[AMR][1000 genomes]
rs9447370	1.00[CEU][hapmap];0.83[MKK][hapmap]
rs9447412	1.00[EUR][1000 genomes]
rs9447413	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75635600-75642000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:75636200-75642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:75636800-75641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:75637600-75640400	Weak transcription	NHLF	lung
5	chr6:75637600-75640600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:75638200-75640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:75638200-75640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:75639600-75641400	Enhancers	HSMMtube	muscle
9	chr6:75639800-75640000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:75639800-75640600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:75639800-75641400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:75639800-75642600	Enhancers	NHDF-Ad	bronchial
13	chr6:75639800-75642800	Enhancers	HSMM	muscle
14	chr6:75639800-75643000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:75639800-75643600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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