Variant report

Variant	rs9293988
Chromosome Location	chr6:75641951-75641952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75558269..75560458-chr6:75641599..75644531,2	K562	blood:

Variant related genes	Relation type
ENSG00000219736	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12332816	1.00[AMR][1000 genomes]
rs12333047	1.00[AMR][1000 genomes]
rs12333198	1.00[AMR][1000 genomes]
rs13437111	1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2883118	1.00[CEU][hapmap]
rs41266763	1.00[EUR][1000 genomes]
rs41269301	1.00[EUR][1000 genomes]
rs4388259	1.00[CEU][hapmap]
rs4449593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510507	1.00[EUR][1000 genomes]
rs560250	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs581649	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931519	1.00[EUR][1000 genomes]
rs6932000	1.00[CEU][hapmap]
rs73747841	1.00[EUR][1000 genomes]
rs73747843	1.00[EUR][1000 genomes]
rs7738809	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743883	1.00[CEU][hapmap]
rs7749000	1.00[CEU][hapmap]
rs7754400	1.00[CEU][hapmap]
rs7755906	1.00[CEU][hapmap]
rs7772503	1.00[CEU][hapmap]
rs7775765	1.00[CEU][hapmap]
rs7776027	1.00[CEU][hapmap]
rs9443061	1.00[AMR][1000 genomes]
rs9443062	1.00[AMR][1000 genomes]
rs9443084	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443089	1.00[AMR][1000 genomes]
rs9443099	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443101	1.00[AMR][1000 genomes]
rs9443106	1.00[AMR][1000 genomes]
rs9443122	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443123	1.00[AMR][1000 genomes]
rs9443125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447275	1.00[AMR][1000 genomes]
rs9447277	1.00[AMR][1000 genomes]
rs9447317	1.00[CEU][hapmap]
rs9447328	1.00[AMR][1000 genomes]
rs9447329	1.00[AMR][1000 genomes]
rs9447333	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9447338	1.00[AMR][1000 genomes]
rs9447369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447370	1.00[CEU][hapmap]
rs9447372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447384	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9447387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447390	1.00[AMR][1000 genomes]
rs9447392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447393	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447435	1.00[EUR][1000 genomes]
rs9447440	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75635600-75642000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:75636200-75642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:75639800-75642600	Enhancers	NHDF-Ad	bronchial
4	chr6:75639800-75642800	Enhancers	HSMM	muscle
5	chr6:75639800-75643000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:75639800-75643600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:75640400-75643000	Enhancers	HMEC	breast
8	chr6:75640400-75643200	Enhancers	NHLF	lung
9	chr6:75640600-75642000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:75640600-75642600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:75640600-75643200	Enhancers	Osteobl	bone
12	chr6:75640800-75642400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:75640800-75642600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:75640800-75642600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:75640800-75642600	Enhancers	NH-A	brain
16	chr6:75640800-75642600	Enhancers	NHEK	skin
17	chr6:75641400-75642200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:75641400-75642400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:75641400-75642400	Enhancers	Hela-S3	cervix
20	chr6:75641400-75642600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:75641400-75642800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:75641600-75642800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:75641600-75643000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:75641800-75642000	Flanking Active TSS	HSMMtube	muscle
25	chr6:75641800-75642200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:75641800-75642600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:75641800-75642800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:75641800-75642800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:75641800-75643800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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