Variant report

Variant	rs9443089
Chromosome Location	chr6:75575227-75575228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12332816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437111	1.00[AMR][1000 genomes]
rs4449593	1.00[AMR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes]
rs7738809	1.00[AMR][1000 genomes]
rs9293988	1.00[AMR][1000 genomes]
rs9443061	1.00[AMR][1000 genomes]
rs9443062	1.00[AMR][1000 genomes]
rs9443084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443122	1.00[AMR][1000 genomes]
rs9443123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443125	1.00[AMR][1000 genomes]
rs9447275	1.00[AMR][1000 genomes]
rs9447277	1.00[AMR][1000 genomes]
rs9447328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447369	1.00[AMR][1000 genomes]
rs9447372	1.00[AMR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes]
rs9447383	1.00[AMR][1000 genomes]
rs9447387	1.00[AMR][1000 genomes]
rs9447390	1.00[AMR][1000 genomes]
rs9447392	1.00[AMR][1000 genomes]
rs9447393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886170	chr6:75477971-75577359	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886171	chr6:75527856-75577359	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886174	chr6:75536940-75577359	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886176	chr6:75539434-75577359	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv603760	chr6:75542717-75583386	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75571000-75577000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75572400-75575400	Enhancers	Ovary	ovary
3	chr6:75575200-75575400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links