Variant report

Variant	rs9447328
Chromosome Location	chr6:75581745-75581746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12332816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437111	1.00[AMR][1000 genomes]
rs4449593	1.00[AMR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes]
rs7738809	1.00[AMR][1000 genomes]
rs9293988	1.00[AMR][1000 genomes]
rs9443061	1.00[AMR][1000 genomes]
rs9443062	1.00[AMR][1000 genomes]
rs9443084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443122	1.00[AMR][1000 genomes]
rs9443123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443125	1.00[AMR][1000 genomes]
rs9447275	1.00[AMR][1000 genomes]
rs9447277	1.00[AMR][1000 genomes]
rs9447329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447369	1.00[AMR][1000 genomes]
rs9447372	1.00[AMR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes]
rs9447383	1.00[AMR][1000 genomes]
rs9447387	1.00[AMR][1000 genomes]
rs9447390	1.00[AMR][1000 genomes]
rs9447392	1.00[AMR][1000 genomes]
rs9447393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv603760	chr6:75542717-75583386	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75580000-75584400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75580000-75584400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75580400-75582000	Enhancers	HSMMtube	muscle
4	chr6:75580600-75582200	Enhancers	HSMM	muscle
5	chr6:75581000-75582200	Enhancers	HMEC	breast
6	chr6:75581000-75584400	Enhancers	Osteobl	bone
7	chr6:75581200-75582000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:75581400-75582000	Enhancers	NHEK	skin
9	chr6:75581600-75582000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:75581600-75582000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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