Variant report

Variant	rs9447369
Chromosome Location	chr6:75640368-75640369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75639046..75641423-chr6:75642242..75645228,2	MCF-7	breast:
2	chr6:75637854..75641239-chr6:75643350..75645986,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12332816	1.00[AMR][1000 genomes]
rs12333047	1.00[AMR][1000 genomes]
rs12333198	1.00[AMR][1000 genomes]
rs13437111	0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41266763	1.00[EUR][1000 genomes]
rs41269301	1.00[EUR][1000 genomes]
rs4449593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510507	1.00[EUR][1000 genomes]
rs560250	1.00[EUR][1000 genomes]
rs581649	1.00[EUR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931519	1.00[EUR][1000 genomes]
rs73747841	1.00[EUR][1000 genomes]
rs73747843	1.00[EUR][1000 genomes]
rs7738809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9293988	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443061	1.00[AMR][1000 genomes]
rs9443062	1.00[AMR][1000 genomes]
rs9443084	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443089	1.00[AMR][1000 genomes]
rs9443099	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443101	1.00[AMR][1000 genomes]
rs9443106	1.00[AMR][1000 genomes]
rs9443122	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443123	1.00[AMR][1000 genomes]
rs9443125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447275	1.00[AMR][1000 genomes]
rs9447277	1.00[AMR][1000 genomes]
rs9447328	1.00[AMR][1000 genomes]
rs9447329	1.00[AMR][1000 genomes]
rs9447333	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9447338	1.00[AMR][1000 genomes]
rs9447372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447384	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9447387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447390	1.00[AMR][1000 genomes]
rs9447392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447393	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447435	1.00[EUR][1000 genomes]
rs9447440	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75635600-75642000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:75636200-75642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:75636800-75641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:75637600-75640400	Weak transcription	NHLF	lung
5	chr6:75637600-75640600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:75638200-75640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:75638200-75640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:75639600-75641400	Enhancers	HSMMtube	muscle
9	chr6:75639800-75640600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:75639800-75641400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:75639800-75642600	Enhancers	NHDF-Ad	bronchial
12	chr6:75639800-75642800	Enhancers	HSMM	muscle
13	chr6:75639800-75643000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:75639800-75643600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:75640000-75640800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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