Variant report

Variant	rs9447390
Chromosome Location	chr6:75674977-75674978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12332816	1.00[AMR][1000 genomes]
rs12333047	1.00[AMR][1000 genomes]
rs12333198	1.00[AMR][1000 genomes]
rs13437111	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs4449593	1.00[AMR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes]
rs7738809	1.00[AMR][1000 genomes]
rs9293988	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443084	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443089	1.00[AMR][1000 genomes]
rs9443099	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9443101	1.00[AMR][1000 genomes]
rs9443106	1.00[AMR][1000 genomes]
rs9443122	1.00[AMR][1000 genomes]
rs9443123	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443125	1.00[AMR][1000 genomes]
rs9447328	1.00[AMR][1000 genomes]
rs9447329	1.00[AMR][1000 genomes]
rs9447333	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9447338	1.00[AMR][1000 genomes]
rs9447369	1.00[AMR][1000 genomes]
rs9447372	1.00[AMR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes]
rs9447383	1.00[AMR][1000 genomes]
rs9447387	1.00[AMR][1000 genomes]
rs9447392	1.00[AMR][1000 genomes]
rs9447393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75667000-75675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75674800-75675600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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