Variant report

Variant	rs4449593
Chromosome Location	chr6:75658669-75658670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75658305..75661106-chr6:75676825..75680487,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12332816	1.00[AMR][1000 genomes]
rs12333047	1.00[AMR][1000 genomes]
rs12333198	1.00[AMR][1000 genomes]
rs13437111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41266763	1.00[EUR][1000 genomes]
rs41269301	1.00[EUR][1000 genomes]
rs510507	1.00[EUR][1000 genomes]
rs560250	1.00[EUR][1000 genomes]
rs581649	1.00[EUR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931519	1.00[EUR][1000 genomes]
rs73462090	1.00[EUR][1000 genomes]
rs73747841	1.00[EUR][1000 genomes]
rs73747843	1.00[EUR][1000 genomes]
rs7738809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9293988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443062	1.00[AMR][1000 genomes]
rs9443084	1.00[AMR][1000 genomes]
rs9443089	1.00[AMR][1000 genomes]
rs9443099	1.00[AMR][1000 genomes]
rs9443101	1.00[AMR][1000 genomes]
rs9443106	1.00[AMR][1000 genomes]
rs9443122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443123	1.00[AMR][1000 genomes]
rs9443125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447275	1.00[AMR][1000 genomes]
rs9447277	1.00[AMR][1000 genomes]
rs9447328	1.00[AMR][1000 genomes]
rs9447329	1.00[AMR][1000 genomes]
rs9447333	1.00[AMR][1000 genomes]
rs9447338	1.00[AMR][1000 genomes]
rs9447369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447384	1.00[EUR][1000 genomes]
rs9447387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447390	1.00[AMR][1000 genomes]
rs9447392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447393	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447435	1.00[EUR][1000 genomes]
rs9447440	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75657600-75665600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:75657800-75663400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:75658400-75663400	Weak transcription	HMEC	breast

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