Variant report
| Variant | rs9447384 |
|---|---|
| Chromosome Location | chr6:75670140-75670141 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:75665143..75670328-chr6:75679224..75682641,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs13437111 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41266763 | 1.00[EUR][1000 genomes] |
| rs41269301 | 1.00[EUR][1000 genomes] |
| rs4449593 | 1.00[EUR][1000 genomes] |
| rs510507 | 1.00[EUR][1000 genomes] |
| rs560250 | 1.00[EUR][1000 genomes] |
| rs581649 | 1.00[EUR][1000 genomes] |
| rs61177673 | 1.00[EUR][1000 genomes] |
| rs6931519 | 1.00[EUR][1000 genomes] |
| rs73462090 | 1.00[EUR][1000 genomes] |
| rs73747841 | 1.00[EUR][1000 genomes] |
| rs73747843 | 1.00[EUR][1000 genomes] |
| rs7738809 | 1.00[EUR][1000 genomes] |
| rs9293988 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9443122 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9443125 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447369 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447372 | 1.00[EUR][1000 genomes] |
| rs9447373 | 1.00[EUR][1000 genomes] |
| rs9447383 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447387 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447392 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447393 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9447435 | 1.00[EUR][1000 genomes] |
| rs9447440 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv830696 | chr6:75538316-75734609 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75667000-75675800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
