Variant report

Variant	rs9447393
Chromosome Location	chr6:75680310-75680311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:75658305..75661106-chr6:75676825..75680487,3	MCF-7	breast:
2	chr6:75312619..75316343-chr6:75677557..75681482,3	MCF-7	breast:
3	chr6:75678710..75681421-chr6:75685866..75687554,2	MCF-7	breast:
4	chr6:75665143..75670328-chr6:75679224..75682641,4	MCF-7	breast:
5	chr6:75678289..75682945-chr6:75910306..75916824,17	MCF-7	breast:
6	chr6:75679003..75680747-chr6:75687605..75691074,3	MCF-7	breast:
7	chr6:75677800..75681711-chr6:75913586..75916557,3	MCF-7	breast:
8	chr6:75663889..75666468-chr6:75678897..75680837,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12332816	1.00[AMR][1000 genomes]
rs12333047	1.00[AMR][1000 genomes]
rs12333198	1.00[AMR][1000 genomes]
rs13437111	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41266763	1.00[EUR][1000 genomes]
rs41269301	1.00[EUR][1000 genomes]
rs4449593	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510507	1.00[EUR][1000 genomes]
rs560250	1.00[EUR][1000 genomes]
rs581649	1.00[EUR][1000 genomes]
rs61177673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931519	1.00[EUR][1000 genomes]
rs73462090	1.00[EUR][1000 genomes]
rs73747841	1.00[EUR][1000 genomes]
rs73747843	1.00[EUR][1000 genomes]
rs7738809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9293988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443084	1.00[AMR][1000 genomes]
rs9443089	1.00[AMR][1000 genomes]
rs9443099	1.00[AMR][1000 genomes]
rs9443101	1.00[AMR][1000 genomes]
rs9443106	1.00[AMR][1000 genomes]
rs9443122	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443123	1.00[AMR][1000 genomes]
rs9443125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447328	1.00[AMR][1000 genomes]
rs9447329	1.00[AMR][1000 genomes]
rs9447333	1.00[AMR][1000 genomes]
rs9447338	1.00[AMR][1000 genomes]
rs9447369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447384	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9447387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447390	1.00[AMR][1000 genomes]
rs9447392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447435	1.00[EUR][1000 genomes]
rs9447440	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75678800-75680400	Enhancers	HUVEC	blood vessel
2	chr6:75679800-75681200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:75679800-75682600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:75679800-75685800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:75679800-75686400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:75680000-75681400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:75680200-75681400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:75680200-75682200	Weak transcription	NHEK	skin

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