Variant report

Variant	rs7755906
Chromosome Location	chr6:75590535-75590536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75589124..75590939-chr6:75914285..75915811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10080721	0.83[ASN][1000 genomes]
rs12661592	0.85[ASN][1000 genomes]
rs12662661	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12663829	0.95[ASN][1000 genomes]
rs12663977	0.83[ASN][1000 genomes]
rs12664010	0.83[ASN][1000 genomes]
rs12664096	0.84[ASN][1000 genomes]
rs12664513	0.85[ASN][1000 genomes]
rs12664807	0.87[ASN][1000 genomes]
rs12664984	0.87[ASN][1000 genomes]
rs12665297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12665702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12665801	0.87[ASN][1000 genomes]
rs13437111	1.00[CEU][hapmap]
rs16885835	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs16885844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16885865	0.88[ASN][1000 genomes]
rs16885904	0.87[ASN][1000 genomes]
rs16885908	0.87[ASN][1000 genomes]
rs16885914	0.85[ASN][1000 genomes]
rs16885916	0.85[ASN][1000 genomes]
rs16885971	0.83[ASN][1000 genomes]
rs2210974	0.94[AFR][1000 genomes]
rs2353249	0.87[ASN][1000 genomes]
rs2353251	0.85[ASN][1000 genomes]
rs2883118	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs28832995	0.83[ASN][1000 genomes]
rs35129971	0.87[ASN][1000 genomes]
rs35835665	0.87[ASN][1000 genomes]
rs35871031	0.87[ASN][1000 genomes]
rs4085727	0.87[ASN][1000 genomes]
rs4085729	0.88[ASN][1000 genomes]
rs4085730	0.88[ASN][1000 genomes]
rs4085731	0.87[ASN][1000 genomes]
rs4112825	0.88[ASN][1000 genomes]
rs4112826	0.88[ASN][1000 genomes]
rs4388259	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4495246	0.83[ASN][1000 genomes]
rs4612126	0.82[ASN][1000 genomes]
rs5023496	1.00[CEU][hapmap]
rs57183891	0.87[ASN][1000 genomes]
rs57290574	0.87[ASN][1000 genomes]
rs57560334	0.87[ASN][1000 genomes]
rs58699375	0.87[ASN][1000 genomes]
rs59041629	0.87[ASN][1000 genomes]
rs59051124	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59154474	0.87[ASN][1000 genomes]
rs59617477	0.83[ASN][1000 genomes]
rs59695593	0.83[ASN][1000 genomes]
rs59848727	0.87[ASN][1000 genomes]
rs60108944	0.87[ASN][1000 genomes]
rs60321049	0.83[ASN][1000 genomes]
rs60356008	0.87[ASN][1000 genomes]
rs60555684	0.83[ASN][1000 genomes]
rs60909334	0.83[ASN][1000 genomes]
rs61308045	0.83[ASN][1000 genomes]
rs61380374	0.83[ASN][1000 genomes]
rs61612838	0.87[ASN][1000 genomes]
rs6453790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453795	0.88[ASN][1000 genomes]
rs6453797	0.83[ASN][1000 genomes]
rs6453798	0.83[ASN][1000 genomes]
rs6910855	0.85[ASN][1000 genomes]
rs6913409	0.94[AFR][1000 genomes]
rs6916626	0.83[ASN][1000 genomes]
rs6917149	0.87[ASN][1000 genomes]
rs6922193	0.83[ASN][1000 genomes]
rs6923380	0.83[ASN][1000 genomes]
rs6929192	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6932000	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs6932942	0.87[ASN][1000 genomes]
rs6934193	0.94[AFR][1000 genomes]
rs6935326	0.88[ASN][1000 genomes]
rs6939666	0.96[AFR][1000 genomes]
rs73458044	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73458047	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7451287	0.83[ASN][1000 genomes]
rs7738809	1.00[CEU][hapmap]
rs7739660	0.83[ASN][1000 genomes]
rs7741832	0.92[AFR][1000 genomes]
rs7743883	1.00[CEU][hapmap];0.92[MKK][hapmap]
rs7746348	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746528	0.96[AFR][1000 genomes]
rs7747261	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7749000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7749133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7753238	0.82[ASN][1000 genomes]
rs7754400	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs7757844	0.96[AFR][1000 genomes]
rs7762264	0.94[AFR][1000 genomes]
rs7769481	0.82[ASN][1000 genomes]
rs7769487	0.83[ASN][1000 genomes]
rs7772503	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7772564	0.83[ASN][1000 genomes]
rs7775765	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs7776027	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs9293988	1.00[CEU][hapmap]
rs9443088	0.94[AFR][1000 genomes]
rs9443091	0.92[AFR][1000 genomes]
rs9443092	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9443095	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9443096	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443100	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9443104	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9443124	0.83[ASN][1000 genomes]
rs9443126	0.83[ASN][1000 genomes]
rs9443129	0.83[ASN][1000 genomes]
rs9447317	1.00[CEU][hapmap]
rs9447330	0.96[AFR][1000 genomes]
rs9447335	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9447337	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9447339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447340	1.00[AFR][1000 genomes]
rs9447343	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9447370	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs9447371	0.87[ASN][1000 genomes]
rs9447374	0.87[ASN][1000 genomes]
rs9447376	0.87[ASN][1000 genomes]
rs9447377	0.87[ASN][1000 genomes]
rs9447378	0.85[ASN][1000 genomes]
rs9447379	0.85[ASN][1000 genomes]
rs9447380	0.85[ASN][1000 genomes]
rs9447386	0.82[ASN][1000 genomes]
rs9447388	0.83[ASN][1000 genomes]
rs9447391	0.83[ASN][1000 genomes]
rs9447394	0.83[ASN][1000 genomes]
rs9447399	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1032153	chr6:75590017-75625051	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75588800-75590600	Enhancers	Osteobl	bone
2	chr6:75589600-75591400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75589600-75591600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:75589600-75599400	Weak transcription	NHLF	lung
5	chr6:75589600-75601000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:75590000-75591600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:75590400-75591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:75590400-75592000	Weak transcription	HSMMtube	muscle

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