Variant report

Variant	rs4112825
Chromosome Location	chr6:75640417-75640418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75639046..75641423-chr6:75642242..75645228,2	MCF-7	breast:
2	chr6:75637854..75641239-chr6:75643350..75645986,3	MCF-7	breast:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10080721	0.95[ASN][1000 genomes]
rs12661592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662661	0.81[ASN][1000 genomes]
rs12663829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12663977	0.95[ASN][1000 genomes]
rs12664010	0.95[ASN][1000 genomes]
rs12664096	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12664513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665138	1.00[EUR][1000 genomes]
rs12665297	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665702	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12665801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885835	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16885844	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16885865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16885916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16885971	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2353249	0.99[ASN][1000 genomes]
rs2353251	0.97[ASN][1000 genomes]
rs2883118	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28832995	0.95[ASN][1000 genomes]
rs35129971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35835665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35871031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4085727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4085729	1.00[ASN][1000 genomes]
rs4085730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4085731	0.99[ASN][1000 genomes]
rs4112826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4286732	0.84[ASN][1000 genomes]
rs4388259	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4495246	0.95[ASN][1000 genomes]
rs4612126	0.93[ASN][1000 genomes]
rs57183891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57290574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57560334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57904603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58699375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59041629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59051124	0.87[ASN][1000 genomes]
rs59154474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59617477	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59695593	0.95[ASN][1000 genomes]
rs59848727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60108944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60321049	0.95[ASN][1000 genomes]
rs60356008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60555684	0.95[ASN][1000 genomes]
rs60909334	0.95[ASN][1000 genomes]
rs61308045	0.95[ASN][1000 genomes]
rs61380374	0.95[ASN][1000 genomes]
rs61612838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6453790	0.88[ASN][1000 genomes]
rs6453795	1.00[ASN][1000 genomes]
rs6453797	0.95[ASN][1000 genomes]
rs6453798	0.95[ASN][1000 genomes]
rs6910855	0.97[ASN][1000 genomes]
rs6916626	0.95[ASN][1000 genomes]
rs6917149	0.99[ASN][1000 genomes]
rs6922193	0.95[ASN][1000 genomes]
rs6923380	0.95[ASN][1000 genomes]
rs6929192	1.00[ASN][1000 genomes]
rs6932000	0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs6932942	0.99[ASN][1000 genomes]
rs6935326	1.00[ASN][1000 genomes]
rs73458044	0.88[ASN][1000 genomes]
rs73458047	0.88[ASN][1000 genomes]
rs7451287	0.95[ASN][1000 genomes]
rs7739660	0.95[ASN][1000 genomes]
rs7746348	0.84[ASN][1000 genomes]
rs7747261	0.90[ASN][1000 genomes]
rs7749000	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs7749133	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs7753238	0.93[ASN][1000 genomes]
rs7754400	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7755906	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs7769481	0.94[ASN][1000 genomes]
rs7769487	0.90[ASN][1000 genomes]
rs7772503	0.91[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs7772564	0.95[ASN][1000 genomes]
rs7775765	0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs7776027	0.91[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs9443092	0.87[ASN][1000 genomes]
rs9443095	0.87[ASN][1000 genomes]
rs9443096	0.88[ASN][1000 genomes]
rs9443100	0.88[ASN][1000 genomes]
rs9443124	0.95[ASN][1000 genomes]
rs9443126	0.95[ASN][1000 genomes]
rs9443129	0.95[ASN][1000 genomes]
rs9447335	0.85[ASN][1000 genomes]
rs9447337	0.88[ASN][1000 genomes]
rs9447339	0.88[ASN][1000 genomes]
rs9447343	0.88[ASN][1000 genomes]
rs9447370	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9447371	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9447374	0.99[ASN][1000 genomes]
rs9447376	0.99[ASN][1000 genomes]
rs9447377	0.99[ASN][1000 genomes]
rs9447378	0.97[ASN][1000 genomes]
rs9447379	0.97[ASN][1000 genomes]
rs9447380	0.97[ASN][1000 genomes]
rs9447386	0.94[ASN][1000 genomes]
rs9447388	0.95[ASN][1000 genomes]
rs9447391	0.95[ASN][1000 genomes]
rs9447394	0.95[ASN][1000 genomes]
rs9447399	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75635600-75642000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:75636200-75642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:75636800-75641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:75637600-75640600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:75638200-75640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:75639600-75641400	Enhancers	HSMMtube	muscle
7	chr6:75639800-75640600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:75639800-75641400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:75639800-75642600	Enhancers	NHDF-Ad	bronchial
10	chr6:75639800-75642800	Enhancers	HSMM	muscle
11	chr6:75639800-75643000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:75639800-75643600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:75640000-75640800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:75640400-75640600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:75640400-75643000	Enhancers	HMEC	breast
16	chr6:75640400-75643200	Enhancers	NHLF	lung

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