Variant report

Variant	rs12664096
Chromosome Location	chr6:75602353-75602354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10498902	0.84[AMR][1000 genomes]
rs12661592	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12663829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12664513	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664807	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12664984	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12665138	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12665297	0.81[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12665702	0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12665801	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16885835	0.81[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16885844	0.81[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16885865	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16885904	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16885908	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16885914	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885971	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2353249	0.81[ASN][1000 genomes]
rs2883118	0.80[ASN][1000 genomes]
rs35129971	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35835665	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35871031	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4085727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4085729	0.82[ASN][1000 genomes]
rs4085730	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4085731	0.81[ASN][1000 genomes]
rs4112825	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4112826	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4388259	0.81[ASN][1000 genomes]
rs57183891	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57290574	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57560334	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57904603	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58699375	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59041629	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59051124	0.83[ASN][1000 genomes]
rs59154474	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59617477	1.00[EUR][1000 genomes]
rs59848727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60108944	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60356008	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61612838	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6453790	0.84[ASN][1000 genomes]
rs6453795	0.82[ASN][1000 genomes]
rs6917149	0.81[ASN][1000 genomes]
rs6929192	0.82[ASN][1000 genomes]
rs6932942	0.81[ASN][1000 genomes]
rs6935326	0.82[ASN][1000 genomes]
rs73458044	0.84[ASN][1000 genomes]
rs73458047	0.84[ASN][1000 genomes]
rs73757947	0.84[AMR][1000 genomes]
rs73757948	0.84[AMR][1000 genomes]
rs73757949	0.84[AMR][1000 genomes]
rs73757950	0.84[AMR][1000 genomes]
rs73757951	0.84[AMR][1000 genomes]
rs73757952	0.84[AMR][1000 genomes]
rs7747261	0.87[ASN][1000 genomes]
rs7749000	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7749133	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7755906	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9443092	0.83[ASN][1000 genomes]
rs9443095	0.83[ASN][1000 genomes]
rs9443096	0.84[ASN][1000 genomes]
rs9443100	0.84[ASN][1000 genomes]
rs9443104	0.86[ASN][1000 genomes]
rs9447335	0.81[ASN][1000 genomes]
rs9447337	0.84[ASN][1000 genomes]
rs9447339	0.84[ASN][1000 genomes]
rs9447343	0.84[ASN][1000 genomes]
rs9447370	0.81[ASN][1000 genomes]
rs9447371	0.81[ASN][1000 genomes]
rs9447374	0.81[ASN][1000 genomes]
rs9447376	0.81[ASN][1000 genomes]
rs9447377	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1032153	chr6:75590017-75625051	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75600800-75602600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75600800-75602800	Enhancers	Osteobl	bone
3	chr6:75601600-75602600	Weak transcription	Ovary	ovary
4	chr6:75602000-75603800	Weak transcription	NHLF	lung
5	chr6:75602200-75602800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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