Variant report

Variant	rs7749133
Chromosome Location	chr6:75625903-75625904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75623758..75626363-chr6:75914057..75916388,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10080721	0.94[ASN][1000 genomes]
rs12661592	0.96[ASN][1000 genomes]
rs12662661	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12663829	0.94[ASN][1000 genomes]
rs12663977	0.94[ASN][1000 genomes]
rs12664010	0.94[ASN][1000 genomes]
rs12664096	0.83[ASN][1000 genomes]
rs12664513	0.96[ASN][1000 genomes]
rs12664807	0.98[ASN][1000 genomes]
rs12664984	0.98[ASN][1000 genomes]
rs12665297	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12665702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12665801	0.98[ASN][1000 genomes]
rs16885835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16885844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16885865	0.99[ASN][1000 genomes]
rs16885904	0.98[ASN][1000 genomes]
rs16885908	0.98[ASN][1000 genomes]
rs16885914	0.96[ASN][1000 genomes]
rs16885916	0.96[ASN][1000 genomes]
rs16885971	0.94[ASN][1000 genomes]
rs2353249	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2353251	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2883118	0.90[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28832995	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35129971	0.98[ASN][1000 genomes]
rs35835665	0.98[ASN][1000 genomes]
rs35871031	0.98[ASN][1000 genomes]
rs4085727	0.98[ASN][1000 genomes]
rs4085729	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4085730	0.99[ASN][1000 genomes]
rs4085731	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4112825	0.99[ASN][1000 genomes]
rs4112826	0.99[ASN][1000 genomes]
rs4286732	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4388259	0.90[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4495246	0.94[ASN][1000 genomes]
rs4612126	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57183891	0.98[ASN][1000 genomes]
rs57290574	0.98[ASN][1000 genomes]
rs57560334	0.98[ASN][1000 genomes]
rs57904603	0.90[ASN][1000 genomes]
rs58699375	0.98[ASN][1000 genomes]
rs59041629	0.98[ASN][1000 genomes]
rs59051124	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59154474	0.98[ASN][1000 genomes]
rs59364413	0.84[AFR][1000 genomes]
rs59617477	0.94[ASN][1000 genomes]
rs59695593	0.94[ASN][1000 genomes]
rs59848727	0.98[ASN][1000 genomes]
rs60108944	0.98[ASN][1000 genomes]
rs60321049	0.94[ASN][1000 genomes]
rs60356008	0.98[ASN][1000 genomes]
rs60555684	0.94[ASN][1000 genomes]
rs60909334	0.94[ASN][1000 genomes]
rs61308045	0.94[ASN][1000 genomes]
rs61380374	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61612838	0.98[ASN][1000 genomes]
rs6453790	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6453795	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6453797	0.94[ASN][1000 genomes]
rs6453798	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6910855	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6916626	0.94[ASN][1000 genomes]
rs6917149	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6922193	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6923380	0.94[ASN][1000 genomes]
rs6929192	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6932000	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6932942	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6935326	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6940086	0.91[AFR][1000 genomes]
rs73458044	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73458047	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7451287	0.94[ASN][1000 genomes]
rs7739660	0.94[ASN][1000 genomes]
rs7743883	0.86[AFR][1000 genomes]
rs7746348	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7747261	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7749000	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753238	0.92[ASN][1000 genomes]
rs7754400	0.91[CHB][hapmap]
rs7755906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7769481	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7769487	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7772503	0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7772564	0.94[ASN][1000 genomes]
rs7775765	0.90[CHB][hapmap];0.94[ASN][1000 genomes]
rs7776027	0.91[CHB][hapmap];0.94[ASN][1000 genomes]
rs9443092	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9443095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9443096	0.89[ASN][1000 genomes]
rs9443100	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9443110	0.83[AFR][1000 genomes]
rs9443124	0.94[ASN][1000 genomes]
rs9443126	0.94[ASN][1000 genomes]
rs9443129	0.94[ASN][1000 genomes]
rs9447335	0.86[ASN][1000 genomes]
rs9447337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9447339	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9447343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9447370	0.90[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9447371	0.98[ASN][1000 genomes]
rs9447374	0.98[ASN][1000 genomes]
rs9447376	0.98[ASN][1000 genomes]
rs9447377	0.98[ASN][1000 genomes]
rs9447378	0.96[ASN][1000 genomes]
rs9447379	0.96[ASN][1000 genomes]
rs9447380	0.96[ASN][1000 genomes]
rs9447386	0.93[ASN][1000 genomes]
rs9447388	0.94[ASN][1000 genomes]
rs9447391	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9447394	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9447399	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv970688	chr6:75624687-75628040	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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