Variant report

Variant	nsv970688
Chromosome Location	chr6:75624687-75628040
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75623758..75626363-chr6:75914057..75916388,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	chromatin interactions

Extended variants
information (count: 60 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:60 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563512945	chr6:75624730-75624731	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs531151875	chr6:75624832-75624833	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs138906108	chr6:75624904-75624905	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs188794194	chr6:75624931-75624932	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs57128413	chr6:75625000-75625001	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs546563515	chr6:75625001-75625002	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs192549410	chr6:75625066-75625067	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs541847864	chr6:75625088-75625089	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs538911358	chr6:75625106-75625107	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs57603931	chr6:75625141-75625142	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs182527857	chr6:75625168-75625169	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs553484335	chr6:75625176-75625177	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs573353245	chr6:75625196-75625197	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs536455501	chr6:75625244-75625245	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs7743883	chr6:75625251-75625252	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs556073837	chr6:75625260-75625261	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs77882186	chr6:75625268-75625269	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs16885844	chr6:75625270-75625271	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs186808899	chr6:75625324-75625325	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs2152829	chr6:75625341-75625342	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs35323107	chr6:75625362-75625363	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs563650364	chr6:75625376-75625377	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs149482656	chr6:75625377-75625378	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs543205465	chr6:75625395-75625396	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs561360201	chr6:75625422-75625423	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs191578477	chr6:75625441-75625442	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs546743955	chr6:75625463-75625464	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs564845044	chr6:75625506-75625507	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs184112218	chr6:75625560-75625561	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs376665846	chr6:75625593-75625594	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs550852047	chr6:75625663-75625664	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs188802441	chr6:75625680-75625681	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs536199153	chr6:75625702-75625703	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs548349648	chr6:75625704-75625705	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs192944285	chr6:75625713-75625714	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs371690063	chr6:75625724-75625725	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs185494382	chr6:75625792-75625793	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs577577095	chr6:75625817-75625818	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs75264346	chr6:75625820-75625821	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs540370555	chr6:75625851-75625852	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs115702460	chr6:75625867-75625868	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs575882149	chr6:75625902-75625903	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs7749133	chr6:75625903-75625904	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs369256616	chr6:75625906-75625907	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs7749000	chr6:75625966-75625967	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs371283883	chr6:75625984-75625985	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs573377601	chr6:75625985-75625986	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs143973666	chr6:75625993-75625994	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs11312337	chr6:75626032-75626033	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs34993451	chr6:75626040-75626041	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelodysplastic syndrome	18508791	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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