Variant report
| Variant | rs57128413 |
|---|---|
| Chromosome Location | chr6:75625000-75625001 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:75623758..75626363-chr6:75914057..75916388,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111799 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs56713383 | 1.00[AMR][1000 genomes] |
| rs57779412 | 1.00[AMR][1000 genomes] |
| rs58174570 | 1.00[AMR][1000 genomes] |
| rs59126156 | 1.00[AMR][1000 genomes] |
| rs6453789 | 1.00[AMR][1000 genomes] |
| rs73456148 | 1.00[AMR][1000 genomes] |
| rs73456180 | 1.00[AMR][1000 genomes] |
| rs73456192 | 1.00[AMR][1000 genomes] |
| rs73456198 | 1.00[AMR][1000 genomes] |
| rs73458003 | 1.00[AMR][1000 genomes] |
| rs73458035 | 1.00[AMR][1000 genomes] |
| rs73458041 | 1.00[AMR][1000 genomes] |
| rs73458057 | 1.00[AMR][1000 genomes] |
| rs7758039 | 1.00[AMR][1000 genomes] |
| rs7758547 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2757179 | chr6:75525739-75625251 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2759443 | chr6:75525739-75625251 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv830696 | chr6:75538316-75734609 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1032153 | chr6:75590017-75625051 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv970688 | chr6:75624687-75628040 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
