Variant report

Variant	rs73458035
Chromosome Location	chr6:75589268-75589269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75589124..75590939-chr6:75914285..75915811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56713383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57128413	1.00[AMR][1000 genomes]
rs57779412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58174570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59126156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62438842	0.94[AFR][1000 genomes]
rs6453789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456148	1.00[AMR][1000 genomes]
rs73456180	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758039	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75588000-75589600	Enhancers	Fetal Lung	lung
2	chr6:75588200-75589600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:75588200-75589800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:75588200-75590000	Enhancers	HMEC	breast
5	chr6:75588400-75589600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:75588400-75589600	Enhancers	NHLF	lung
7	chr6:75588400-75589800	Enhancers	NHEK	skin
8	chr6:75588400-75590400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:75588600-75589600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:75588600-75589600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:75588600-75589600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:75588600-75589600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:75588600-75589600	Enhancers	Ovary	ovary
14	chr6:75588600-75589600	Enhancers	Hela-S3	cervix
15	chr6:75588600-75589600	Enhancers	HSMM	muscle
16	chr6:75588600-75589800	Enhancers	HSMMtube	muscle
17	chr6:75588600-75590000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:75588600-75590200	Enhancers	NHDF-Ad	bronchial
19	chr6:75588800-75589600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:75588800-75589600	Enhancers	Rectal Smooth Muscle	rectum
21	chr6:75588800-75590600	Enhancers	Osteobl	bone
22	chr6:75589200-75589600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:75589200-75589600	Enhancers	Fetal Muscle Leg	muscle

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