Variant report

Variant	rs59126156
Chromosome Location	chr6:75587089-75587090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56713383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57128413	1.00[AMR][1000 genomes]
rs57779412	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58174570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62438842	0.90[AFR][1000 genomes]
rs6453789	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456148	1.00[AMR][1000 genomes]
rs73456180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75582000-75588400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:75582600-75588600	Weak transcription	HSMMtube	muscle
3	chr6:75583800-75588600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:75584000-75588800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:75584200-75588200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:75584200-75588400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:75584400-75588000	Weak transcription	Fetal Lung	lung
8	chr6:75584400-75588600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:75584400-75588600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:75584400-75588600	Weak transcription	NHDF-Ad	bronchial
11	chr6:75584400-75588800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:75584400-75588800	Weak transcription	Osteobl	bone
13	chr6:75584800-75589200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:75585000-75588600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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