Variant report
| Variant | rs10498902 |
|---|---|
| Chromosome Location | chr6:75478631-75478632 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10498899 | 1.00[EUR][1000 genomes] |
| rs12663829 | 0.84[AMR][1000 genomes] |
| rs12664096 | 0.84[AMR][1000 genomes] |
| rs12665702 | 0.84[AMR][1000 genomes] |
| rs16885219 | 1.00[EUR][1000 genomes] |
| rs16885245 | 1.00[EUR][1000 genomes] |
| rs16885249 | 1.00[EUR][1000 genomes] |
| rs16885255 | 1.00[EUR][1000 genomes] |
| rs16885284 | 1.00[EUR][1000 genomes] |
| rs16885290 | 1.00[EUR][1000 genomes] |
| rs16885295 | 1.00[EUR][1000 genomes] |
| rs58081408 | 1.00[EUR][1000 genomes] |
| rs59720369 | 1.00[EUR][1000 genomes] |
| rs61335781 | 1.00[EUR][1000 genomes] |
| rs6904990 | 1.00[EUR][1000 genomes] |
| rs6918256 | 1.00[EUR][1000 genomes] |
| rs6940669 | 1.00[EUR][1000 genomes] |
| rs73459828 | 1.00[EUR][1000 genomes] |
| rs73459831 | 1.00[EUR][1000 genomes] |
| rs73459834 | 1.00[EUR][1000 genomes] |
| rs73459836 | 1.00[EUR][1000 genomes] |
| rs73459843 | 1.00[EUR][1000 genomes] |
| rs73459849 | 1.00[EUR][1000 genomes] |
| rs73459850 | 1.00[EUR][1000 genomes] |
| rs73459852 | 1.00[EUR][1000 genomes] |
| rs73459857 | 1.00[EUR][1000 genomes] |
| rs73459859 | 1.00[EUR][1000 genomes] |
| rs73757947 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73757948 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73757949 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73757950 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73757951 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73757952 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv830695 | chr6:75409656-75583115 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv886169 | chr6:75432861-75610722 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv886170 | chr6:75477971-75577359 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75477800-75478800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr6:75478600-75480200 | Enhancers | Ovary | ovary |
