Variant report

Variant	rs16885284
Chromosome Location	chr6:75368210-75368211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10498899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10498902	1.00[EUR][1000 genomes]
rs16885127	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16885136	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16885150	0.83[ASN][1000 genomes]
rs16885156	0.84[ASN][1000 genomes]
rs16885219	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885245	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16885249	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16885255	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16885278	0.96[ASN][1000 genomes]
rs16885290	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885295	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885371	0.92[ASN][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs4269337	0.92[ASN][1000 genomes]
rs58081408	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59720369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61335781	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6904990	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906569	0.96[ASN][1000 genomes]
rs6918256	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6940669	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459828	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459831	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459834	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459836	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459843	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459849	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459850	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459852	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73459857	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459859	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73757947	1.00[EUR][1000 genomes]
rs73757948	1.00[EUR][1000 genomes]
rs73757949	1.00[EUR][1000 genomes]
rs73757950	1.00[EUR][1000 genomes]
rs73757951	1.00[EUR][1000 genomes]
rs73757952	1.00[EUR][1000 genomes]
rs9791369	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1027029	chr6:75364848-75417967	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015675	chr6:75365189-75422887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75363800-75369200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75366000-75368600	Enhancers	Osteobl	bone
3	chr6:75366400-75368400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:75367600-75368400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:75368000-75371000	Weak transcription	NHDF-Ad	bronchial

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