Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10498899	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16885127	1.00[JPT][hapmap]
rs16885136	1.00[JPT][hapmap]
rs16885219	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16885245	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16885249	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16885255	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16885278	0.88[ASN][1000 genomes]
rs16885284	0.92[ASN][1000 genomes]
rs16885290	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16885295	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16885520	1.00[AFR][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs1932839	0.81[ASN][1000 genomes]
rs34733408	1.00[AFR][1000 genomes]
rs4269337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58081408	0.88[ASN][1000 genomes]
rs59720369	0.88[ASN][1000 genomes]
rs61335781	0.88[ASN][1000 genomes]
rs6904990	0.88[ASN][1000 genomes]
rs6906569	0.88[ASN][1000 genomes]
rs6918256	0.88[ASN][1000 genomes]
rs6940669	0.88[ASN][1000 genomes]
rs73459828	0.88[ASN][1000 genomes]
rs73459831	0.88[ASN][1000 genomes]
rs73459834	0.88[ASN][1000 genomes]
rs73459836	0.88[ASN][1000 genomes]
rs73459843	0.88[ASN][1000 genomes]
rs73459849	0.88[ASN][1000 genomes]
rs73459850	0.88[ASN][1000 genomes]
rs73459852	0.88[ASN][1000 genomes]
rs73459857	0.87[ASN][1000 genomes]
rs73459859	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1027029	chr6:75364848-75417967	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015675	chr6:75365189-75422887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75415600-75423600	Weak transcription	Osteobl	bone
2	chr6:75416800-75417200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75416800-75417800	Enhancers	A549	lung

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