Variant report

Variant	rs16885127
Chromosome Location	chr6:75307465-75307466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr6:75307386-75307965	GM12878	blood:	n/a	n/a
2	GATA2	chr6:75306773-75307577	HUVEC	blood vessel:	n/a	n/a
3	NFIC	chr6:75307446-75308908	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:75307004-75307505	HUVEC	blood vessel:	n/a	n/a
5	ELK1	chr6:75307387-75307542	GM12878	blood:	n/a	n/a
6	FOXM1	chr6:75307424-75308753	GM12878	blood:	n/a	n/a
7	POLR2A	chr6:75306789-75307616	PFSK-1	brain:	n/a	n/a
8	NFIC	chr6:75307163-75308772	GM12878	blood:	n/a	n/a
9	CHD1	chr6:75307464-75307471	GM12878	blood:	n/a	n/a
10	ZNF384	chr6:75307259-75307587	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75307090..75309713-chr6:75464873..75467404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272243	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10498899	1.00[JPT][hapmap]
rs16885111	1.00[AMR][1000 genomes]
rs16885136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16885150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16885156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs9791369	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75306200-75307600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:75306400-75307600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:75306400-75308600	Enhancers	HUVEC	blood vessel
4	chr6:75306400-75309400	Enhancers	HMEC	breast
5	chr6:75306400-75309400	Enhancers	HSMM	muscle
6	chr6:75306400-75309600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:75306600-75308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:75306800-75307600	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:75306800-75309000	Enhancers	Osteobl	bone
10	chr6:75306800-75309200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:75306800-75309200	Enhancers	NHEK	skin
12	chr6:75307000-75307600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:75307000-75308400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:75307000-75308400	Weak transcription	NH-A	brain
15	chr6:75307000-75309200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:75307000-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:75307200-75312000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:75307400-75308200	Weak transcription	A549	lung
20	chr6:75307400-75309600	Enhancers	Hela-S3	cervix
21	chr6:75307400-75312800	Weak transcription	NHDF-Ad	bronchial

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