Variant report

Variant	rs16885150
Chromosome Location	chr6:75316135-75316136
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75315280..75317355-chr6:75323555..75325158,2	MCF-7	breast:
2	chr6:75312619..75316343-chr6:75677557..75681482,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10498899	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12111118	0.81[ASN][1000 genomes]
rs1317335	0.83[ASN][1000 genomes]
rs16885111	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16885127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16885136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885146	0.83[ASN][1000 genomes]
rs16885151	0.83[ASN][1000 genomes]
rs16885156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885219	0.93[ASN][1000 genomes]
rs16885245	0.87[ASN][1000 genomes]
rs16885249	0.87[ASN][1000 genomes]
rs16885255	0.87[ASN][1000 genomes]
rs16885278	0.87[ASN][1000 genomes]
rs16885284	0.83[ASN][1000 genomes]
rs16885290	0.83[ASN][1000 genomes]
rs16885295	0.83[ASN][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs56188830	0.81[ASN][1000 genomes]
rs58081408	0.87[ASN][1000 genomes]
rs59720369	0.87[ASN][1000 genomes]
rs61335781	0.87[ASN][1000 genomes]
rs6904990	0.87[ASN][1000 genomes]
rs6906569	0.87[ASN][1000 genomes]
rs6918256	0.87[ASN][1000 genomes]
rs6940669	0.87[ASN][1000 genomes]
rs73459828	0.87[ASN][1000 genomes]
rs73459831	0.87[ASN][1000 genomes]
rs73459834	0.87[ASN][1000 genomes]
rs73459836	0.87[ASN][1000 genomes]
rs73459843	0.87[ASN][1000 genomes]
rs73459849	0.87[ASN][1000 genomes]
rs73459850	0.87[ASN][1000 genomes]
rs73459852	0.87[ASN][1000 genomes]
rs73459857	0.86[ASN][1000 genomes]
rs73459859	0.87[ASN][1000 genomes]
rs868944	0.83[ASN][1000 genomes]
rs9791369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75307000-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:75313000-75316200	Enhancers	Osteobl	bone
4	chr6:75313000-75317400	Enhancers	HSMMtube	muscle
5	chr6:75313200-75316400	Enhancers	Hela-S3	cervix
6	chr6:75315000-75316200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:75315000-75316200	Enhancers	HMEC	breast
8	chr6:75315200-75316200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:75315200-75316200	Enhancers	NHDF-Ad	bronchial
10	chr6:75315200-75317200	Enhancers	NHEK	skin
11	chr6:75315200-75318000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:75315400-75316400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:75315400-75318000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:75315400-75318400	Enhancers	NHLF	lung
15	chr6:75315600-75316200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:75315600-75316200	Enhancers	NH-A	brain
17	chr6:75315600-75316400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:75315600-75317000	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:75315800-75316200	Flanking Active TSS	A549	lung
20	chr6:75315800-75316400	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:75315800-75317400	Enhancers	Adipose Nuclei	Adipose
22	chr6:75315800-75320600	Enhancers	HUVEC	blood vessel
23	chr6:75316000-75316200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:75316000-75316200	Flanking Active TSS	HSMM	muscle
25	chr6:75316000-75316600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:75316000-75316800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:75316000-75316800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:75316000-75317400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:75316000-75317600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:75316000-75318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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