Variant report

Variant	rs12111118
Chromosome Location	chr6:75316346-75316347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75315280..75317355-chr6:75323555..75325158,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1317335	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885136	0.81[ASN][1000 genomes]
rs16885146	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885150	0.81[ASN][1000 genomes]
rs16885151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885156	0.80[ASN][1000 genomes]
rs73757906	0.89[EUR][1000 genomes]
rs868944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75307000-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:75313000-75317400	Enhancers	HSMMtube	muscle
4	chr6:75313200-75316400	Enhancers	Hela-S3	cervix
5	chr6:75315200-75317200	Enhancers	NHEK	skin
6	chr6:75315200-75318000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:75315400-75316400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:75315400-75318000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:75315400-75318400	Enhancers	NHLF	lung
10	chr6:75315600-75316400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr6:75315600-75317000	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:75315800-75316400	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:75315800-75317400	Enhancers	Adipose Nuclei	Adipose
14	chr6:75315800-75320600	Enhancers	HUVEC	blood vessel
15	chr6:75316000-75316600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:75316000-75316800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:75316000-75316800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:75316000-75317400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:75316000-75317600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:75316000-75318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:75316200-75316400	Enhancers	A549	lung
22	chr6:75316200-75316400	Enhancers	HSMM	muscle
23	chr6:75316200-75316600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:75316200-75316600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:75316200-75316600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:75316200-75316600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:75316200-75316600	Flanking Active TSS	HMEC	breast
28	chr6:75316200-75316600	Flanking Active TSS	NH-A	brain
29	chr6:75316200-75316600	Flanking Active TSS	NHDF-Ad	bronchial
30	chr6:75316200-75316600	Flanking Active TSS	Osteobl	bone
31	chr6:75316200-75317000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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